Basic Information
Locus ID:
evm.TU.utg000004l.97
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000004l | 917210 | 923125 | + | evm.TU.utg000004l.97 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 82,409.42 Da | 44.14 | 75.05 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 71 | 226 | 1.16228E-27 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 443 | 512 | 4.8E-6 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 105 | 180 | 8.3E-7 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 35 | 376 | 1.1E-106 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 379 | 437 | 2.1E-9 | IPR007010 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 379 | 505 | 6.87E-35 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 230 | 376 | 2.62E-63 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 34 | 225 | 2.51E-46 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 35 | 374 | 8.0E-151 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 64 | 220 | 8.0E-151 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 379 | 494 | 1.7E-24 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 562 | 578 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_021629091.1 | nuclear poly(A) polymerase 4 isoform X1 [Manihot esculenta] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MJH0 | polynucleotide adenylyltransferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology