Basic Information
Locus ID:
evm.TU.utg000004l.315
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000004l | 4025963 | 4031208 | + | evm.TU.utg000004l.315 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 98,713.72 Da | 67.59 | 67.65 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 806 | 846 | 3.40252E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 804 | 850 | 7.7E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 806 | 852 | 8.39E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 790 | 857 | 3.6E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 807 | 846 | 10.6304 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 490 | - | - |
| Coils | Coil | Coil | 736 | 756 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021659180.1 | uncharacterized protein LOC110649078 isoform X1 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A6N2LQQ4 | RING-type domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS263386 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology