Basic Information
Locus ID:
evm.TU.utg000004l.251
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
COP9 signalosome complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000004l | 2332221 | 2335707 | - | evm.TU.utg000004l.251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 40,968.63 Da | 44.00 | 80.87 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08069 | MPN_RPN11_CSN5 | 60 | 332 | 1.80311E-166 | - |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 68 | 179 | 3.3E-34 | IPR000555 |
| Pfam | PF18323 | Cop9 signalosome subunit 5 C-terminal domain | 267 | 347 | 3.3E-26 | IPR040961 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 70 | 207 | 8.5E-14 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 6 | 273 | 2.9E-114 | - |
| SMART | SM00232 | pad1_6 | 70 | 207 | 4.6E-47 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 71 | 208 | 33.755825 | IPR037518 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22920.1 | COP9 signalosome 5A. AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype. | 0 |
| RefSeq | XP_002527960.1 | COP9 signalosome complex subunit 5b [Ricinus communis] | 0 |
| Q8LAZ7 | COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana OX=3702 GN=CSN5A PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2K9Y6 | MPN domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7782 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13106 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034416 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033490 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20473, Sbi_jg23330 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17103 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009100 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63561, Sgl68054 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017221, gene:ENSEOMG00000020679 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0013420, CQ.Regalona.r1.2BG0015440 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30251900 |
| Apiaceae | Apium graveolens | 1 | Ag8G01268 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G003770, contig69480108G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103718036, gene-LOC103721529 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1428.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G33348 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G22920.1, AT1G71230.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008042m.g.v1.0, Thhalv10018788m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g20380.v2.2, Sp5g26420.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g030530.2N, BniB04g038190.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2188 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2382 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g06670 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0004s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g22590 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1603 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028703 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05034 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2545, BH09.2778, CH09.2976 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0301140, gene-QOZ80_4BG0331910 |
| Poaceae | Hordeum vulgare | 5 | HORVU.MOREX.r3.2HG0203060.1, HORVU.MOREX.r3.3HG0238330.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046854 |
| Poaceae | Oryza coarctata | 2 | Oco07G017840, Oco08G017230 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G264100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G002160, Chr25G001700, Chr26G017210, Chr30G001710 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G856000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG071050, gene_TRIDC2BG076780 |
| Poaceae | Triticum aestivum | 2 | TraesCS2A02G504600.1, TraesCS2D02G505300.1 |
| Poaceae | Zea mays | 1 | Zm00001eb068020_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23062 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20584 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.831, evm.TU.LG15.101 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g14700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.977 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13512 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10845 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9215 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.251 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004104 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3690 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7726 |
| Salicaceae | Populus euphratica | 2 | populus_peu04590, populus_peu13073 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603052 |
| Solanaceae | Solanum chilense | 2 | SOLCI000120000, SOLCI006509000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004781, gene-LOC107023832 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13360 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1517 |
| Zosteraceae | Zostera marina | 1 | Zosma03g19520.v3.1 |