Basic Information
Locus ID:
evm.TU.utg000004l.236
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000004l | 2164464 | 2169902 | + | evm.TU.utg000004l.236 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 79,638.29 Da | 48.38 | 79.32 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 177 | 481 | 4.84486E-160 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 178 | 481 | 1.3E-43 | IPR001394 |
| Pfam | PF01753 | MYND finger | 71 | 108 | 9.4E-11 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 174 | 505 | 2.75E-87 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 69 | 113 | 7.85E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 174 | 492 | 9.8E-89 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 58 | 113 | 3.9E-15 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 178 | 484 | 47.942627 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 71 | 108 | 12.268109 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 71 | 108 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 179 | 194 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 724 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 724 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_034928192.1 | ubiquitin carboxyl-terminal hydrolase 18-like [Populus alba] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2LAN6 | Uncharacterized protein MANES_16G133800 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology