Basic Information
Locus ID:
evm.TU.utg000004l.23
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000004l | 187856 | 191919 | - | evm.TU.utg000004l.23 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.70 | 45,954.08 Da | 46.28 | 69.88 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 139 | 213 | 2.695E-52 | - |
| CDD | cd12354 | RRM3_TIA1_like | 259 | 334 | 1.24894E-33 | - |
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 1.4904E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 261 | 320 | 6.3E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 6.9E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | 1.1E-17 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 132 | 221 | 5.78E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 37 | 131 | 1.75E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 247 | 338 | 4.62E-19 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 134 | 1.3E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 233 | 339 | 6.7E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 135 | 229 | 4.1E-26 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 260 | 330 | 4.0E-14 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 139 | 212 | 6.5E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 1.6E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 15.340365 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 259 | 334 | 14.589928 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | 17.131182 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 257 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_040952181.1 | oligouridylate-binding protein 1B-like [Gossypium hirsutum] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MF46 | Uncharacterized protein MANES_11G016600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology