Basic Information
Locus ID:
evm.TU.utg000004l.182
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000004l | 1563177 | 1567455 | + | evm.TU.utg000004l.182 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 65,067.89 Da | 30.06 | 102.59 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 283 | 385 | 6.45354E-25 | - |
| CDD | cd00030 | C2 | 457 | 557 | 1.45341E-24 | - |
| Pfam | PF00168 | C2 domain | 455 | 554 | 5.9E-24 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 89 | 267 | 7.1E-15 | IPR039010 |
| Pfam | PF00168 | C2 domain | 282 | 385 | 5.8E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 279 | 410 | 1.64E-29 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 451 | 574 | 1.09E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 438 | 574 | 2.1E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 274 | 409 | 6.4E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 456 | 555 | 4.6E-21 | IPR000008 |
| SMART | SM00239 | C2_3c | 282 | 382 | 7.6E-21 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 437 | 555 | 19.490564 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 262 | 383 | 19.994785 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 84 | 268 | 29.780315 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 520 | 528 | 9.9E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 472 | 484 | 9.9E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 498 | 511 | 9.9E-5 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_015572574.1 | synaptotagmin-4 [Ricinus communis] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067KEY0 | Synaptotagmin-5 OS=Jatropha curcas OX=180498 GN=JCGZ_07139 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology