Basic Information
Locus ID:
evm.TU.utg000003l.696
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
GPI transamidase component
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000003l | 7529261 | 7536546 | + | evm.TU.utg000003l.696 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 106,589.66 Da | 45.80 | 84.31 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14290 | UBA_PUB_plant | 687 | 735 | 2.47295E-23 | - |
| Pfam | PF04113 | Gpi16 subunit, GPI transamidase component | 23 | 610 | 7.2E-178 | IPR007245 |
| Pfam | PF09409 | PUB domain | 895 | 932 | 3.2E-7 | IPR018997 |
| Pfam | PF00627 | UBA/TS-N domain | 690 | 725 | 1.2E-6 | IPR015940 |
| SUPERFAMILY | SSF143503 | PUG domain-like | 877 | 931 | 2.88E-11 | IPR036339 |
| SUPERFAMILY | SSF46934 | UBA-like | 683 | 736 | 4.79E-13 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 690 | 734 | 1.1E-16 | - |
| Gene3D | G3DSA:1.20.58.2190 | - | 882 | 934 | 3.1E-10 | - |
| SMART | SM00165 | uba_6 | 689 | 727 | 0.0037 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 687 | 728 | 11.052874 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 799 | 824 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 787 | - | - |
| Coils | Coil | Coil | 802 | 822 | - | - |
| Coils | Coil | Coil | 766 | 792 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07140.1 | GPI transamidase component Gpi16 subunit family protein. | 0 |
| RefSeq | XP_012085083.1 | GPI transamidase component PIG-T [Jatropha curcas] | 0 |
| Q8BXQ2 | GPI transamidase component PIG-T OS=Mus musculus OX=10090 GN=Pigt PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2IVV0 | Uncharacterized protein MANES_13G046400 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36116 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6483 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167820 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26568, Sbi_jg33994 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15092 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011900 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73855, Sgl77358 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006710, gene:ENSEOMG00000035009 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0010090, CQ.Regalona.r1.7BG0012230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30014350 |
| Apiaceae | Apium graveolens | 1 | Ag10G00808 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G004720 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695658 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.2927.V1.1, AsparagusV1_09.797.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G05889 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G07140.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020265m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g19120.v2.2, Sp3g06080.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g056740.2N, BniB02g069770.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1128, Ceq06G1980 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2089 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g02960 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0138s00023.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g21550 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1582 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036437 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23972 |
| Poaceae | Echinochloa crus-galli | 3 | BH07.1449, CH07.1166, Contig398.9 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0392910, gene-QOZ80_5BG0441180 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0352760.1, HORVU.MOREX.r3.6HG0625340.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026217 |
| Poaceae | Oryza coarctata | 2 | Oco21G005520, Oco22G006620 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g28980.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G225800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0206234 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G009730, Chr27G006700 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G193700, Tel6E01G649500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG030920, gene_TRIDC4BG018850 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4A02G193700.1, TraesCS4B02G121400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb269850_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-30254, nbis-gene-30255 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25930 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG16.1670 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g04320 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1122 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21063 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8600 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18632 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.696 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009295 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1364 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4944 |
| Salicaceae | Populus euphratica | 2 | populus_peu17916, populus_peu24411 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132610074, gene-LOC132641303 |
| Solanaceae | Solanum chilense | 1 | SOLCI006713100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031517 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1827 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2850 |
| Zosteraceae | Zostera marina | 1 | Zosma05g15240.v3.1 |