Basic Information
Locus ID:
evm.TU.utg000003l.574
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000003l | 6655835 | 6659648 | + | evm.TU.utg000003l.574 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 46,617.15 Da | 52.77 | 78.97 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 294 | 319 | 0.0085 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 74 | 322 | 1.68E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 80 | 407 | 2.9E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 236 | 276 | 0.021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 320 | 0.043 | IPR001680 |
| SMART | SM00320 | WD40_4 | 154 | 189 | 440.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 70 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_021608872.1 | autophagy-related protein 18a isoform X1 [Manihot esculenta] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LL30 | Autophagy-related protein 18a-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology