halophFGD

Basic Information

Locus ID: evm.TU.utg000003l.546

Species & Taxonomic ID: Kandelia candel & 61147

Genome Assembly: GCA_037832225.1

Description: LEC14B protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
PERG.utg000003l	6420868	6426428	-	evm.TU.utg000003l.546

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.38	54,272.35 Da	43.26	71.39	-0.43

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	419	455	5.8E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	254	285	0.0043	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	294	331	7.8E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	215	242	0.096	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	372	413	0.16	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	112	455	3.14E-53	IPR036322
Gene3D	G3DSA:2.130.10.10	-	211	352	1.4E-27	IPR015943
Gene3D	G3DSA:2.130.10.10	-	104	210	7.1E-8	IPR015943
Gene3D	G3DSA:2.130.10.10	-	353	480	5.3E-17	IPR015943
SMART	SM00320	WD40_4	292	331	1.6E-4	IPR001680
SMART	SM00320	WD40_4	103	139	92.0	IPR001680
SMART	SM00320	WD40_4	148	184	270.0	IPR001680
SMART	SM00320	WD40_4	246	285	9.5E-5	IPR001680
SMART	SM00320	WD40_4	190	242	0.14	IPR001680
SMART	SM00320	WD40_4	416	455	1.5E-6	IPR001680
SMART	SM00320	WD40_4	368	413	1.5	IPR001680
PIRSF	PIRSF038135	WD_rpt_23	1	479	2.5E-204	IPR017399
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	299	340	12.346452	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	299	333	10.258324	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	217	251	9.773251	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	252	285	10.34136	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	423	455	9.505904	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	252	285	8.702878	-
PRINTS	PR00320	G protein beta WD-40 repeat signature	229	243	9.9E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	272	286	9.9E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	318	332	9.9E-5	IPR020472
MobiDBLite	mobidb-lite	consensus disorder prediction	463	482	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K11801 (DDB1- and CUL4-associated factor 11)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G03020.1	transducin family protein / WD-40 repeat family protein.
RefSeq	XP_015578238.1	LEC14B protein [Ricinus communis]
Swiss-Prot	Q40153	LEC14B protein OS=Lithospermum erythrorhizon OX=34254 PE=2 SV=1
TrEMBL	A0A2P2MCQ9	LEC14B homolog OS=Rhizophora mucronata OX=61149 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg27965, jg8840
Aizoaceae	Mesembryanthemum crystallinum	1	gene_4240
Amaranthaceae	Atriplex hortensis	2	Ah020659, Ah029679
Amaranthaceae	Beta vulgaris	1	BVRB_7g165700
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg16358, Sbi_jg35803, Sbi_jg51804, Sbi_jg829
Amaranthaceae	Salicornia europaea	2	Seu_jg13358, Seu_jg3896
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00019786
Amaranthaceae	Suaeda glauca	2	Sgl72037, Sgl75604
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000006827, gene:ENSEOMG00000012738 ... gene:ENSEOMG00000030023, gene:ENSEOMG00000034154, gene:ENSEOMG00000041088, gene:ENSEOMG00000046104
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0016640, CQ.Regalona.r1.3BG0016510 ... CQ.Regalona.r1.7AG0014900, CQ.Regalona.r1.7BG0016800
Anacardiaceae	Pistacia vera	2	pistato.v30011350, pistato.v30238220
Apiaceae	Apium graveolens	5	Ag10G00772, Ag2G02426, Ag5G02458, Ag8G01695, Ag9G01820
Arecaceae	Cocos nucifera	2	COCNU_01G002780, scaffold006566G000150
Arecaceae	Phoenix dactylifera	2	gene-LOC103721036, gene-LOC103724227
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2023.V1.1, AsparagusV1_07.935.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G03224, Ftri3G19980, Ftri9G25668
Brassicaceae	Arabidopsis thaliana	1	AT4G03020.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10028659m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g03060.v2.2
Brassicaceae	Brassica nigra	2	BniB08g039150.2N, BniB08g045690.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G1641
Casuarinaceae	Casuarina glauca	1	Cgl06G1701
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g05240
Dunaliellaceae	Dunaliella salina	1	Dusal.0973s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate06g22820
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-6289, nbisL1-mrna-9649
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.239, evm.TU.LG11.1392, evm.TU.LG11.995
Plantaginaceae	Plantago ovata	1	Pov_00024805
Plumbaginaceae	Limonium bicolor	1	Lb8G36260
Poaceae	Echinochloa crus-galli	7	AH05.2503, AH05.775, BH02.1792, BH05.1002, BH05.2585 ... CH05.1145, CH05.2695
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0017480, gene-QOZ80_1BG0066380 ... gene-QOZ80_5AG0373540, gene-QOZ80_5AG0405310, gene-QOZ80_5BG0422710, gene-QOZ80_5BG0453440
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0014190.1, HORVU.MOREX.r3.1HG0019410.1 ... HORVU.MOREX.r3.1HG0062700.1
Poaceae	Lolium multiflorum	2	gene-QYE76_009485, gene-QYE76_013335
Poaceae	Oryza coarctata	5	Oco01G010620, Oco02G011360, Oco09G009060, Oco10G002120 ... Oco10G009530
Poaceae	Oryza sativa	3	LOC_Os01g28680.1, LOC_Os05g05210.1, LOC_Os05g33710.1
Poaceae	Paspalum vaginatum	2	gene-BS78_09G040800, gene-BS78_09G141300
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0500549, Pt_Chr0505205, Pt_Chr0506203
Poaceae	Sporobolus alterniflorus	5	Chr09G008020, Chr13G016820, Chr18G001260, Chr18G009000 ... Chr22G008650
Poaceae	Thinopyrum elongatum	4	Tel1E01G134700, Tel1E01G170400, Tel1E01G422800 ... Tel5E01G051200
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG008920, gene_TRIDC1AG012340 ... gene_TRIDC1AG038120, gene_TRIDC1BG011120, gene_TRIDC1BG015210, gene_TRIDC1BG042990
Poaceae	Triticum aestivum	9	TraesCS1A02G065300.2, TraesCS1A02G086800.2 ... TraesCS1A02G255000.1, TraesCS1B02G083400.1, TraesCS1B02G105200.2, TraesCS1B02G263400.2, TraesCS1D02G066000.1, TraesCS1D02G088200.1, TraesCS1D02G254400.1
Poaceae	Zea mays	2	Zm00001eb349670_P002, Zm00001eb354420_P001
Poaceae	Zoysia japonica	2	nbis-gene-18207, nbis-gene-52838
Poaceae	Zoysia macrostachya	3	Zma_g26411, Zma_g26852, Zma_g27685
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.2022, evm.TU.LG03.761, evm.TU.LG12.968 ... evm.TU.LG14.323
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g10740
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_3_RagTag.521, evm.TU.Scaffold_9_RagTag.875
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-1442, nbisL1-mrna-21349
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-19926, nbisL1-mrna-21386
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-18431, nbisL1-mrna-6245
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.546, evm.TU.utg000019l.900
Rhizophoraceae	Kandelia obovata	2	Maker00009533, Maker00012425
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1530, nbisL1-mrna-6297
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-2052, nbisL1-mrna-5182
Salicaceae	Populus euphratica	4	populus_peu07816, populus_peu22033, populus_peu22037 ... populus_peu27185
Solanaceae	Lycium barbarum	2	gene-LOC132605607, gene-LOC132645046
Solanaceae	Solanum chilense	2	SOLCI001973800, SOLCI002921100
Solanaceae	Solanum pennellii	2	gene-LOC107008401, gene-LOC107022037
Tamaricaceae	Reaumuria soongarica	1	gene_8484
Tamaricaceae	Tamarix chinensis	1	TC12G1524
Zosteraceae	Zostera marina	1	Zosma01g20360.v3.1