Basic Information
Locus ID:
evm.TU.utg000003l.493
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000003l | 5957492 | 5960068 | - | evm.TU.utg000003l.493 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 25,131.34 Da | 33.52 | 72.16 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 5 | 218 | 3.7E-77 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 100 | 206 | 1.08E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 104 | 221 | 2.0E-39 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 109 | 214 | 21.453754 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_002302075.1 | auxin-induced protein AUX28 [Populus trichocarpa] | 0 |
| P13089 | Auxin-induced protein AUX28 OS=Glycine max OX=3847 GN=AUX28 PE=2 SV=1 | 0 | |
| TrEMBL | B9GS70 | Auxin-responsive protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G044900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology