Basic Information
Locus ID:
evm.TU.utg000002l.812
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000002l | 8423283 | 8425291 | + | evm.TU.utg000002l.812 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.39 | 37,046.61 Da | 53.05 | 63.51 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 31 | 116 | 2.52328E-47 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 242 | 306 | 5.87327E-17 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 35 | 116 | 4.1E-19 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 242 | 309 | 1.1E-10 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 239 | 312 | 2.49E-19 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 25 | 124 | 1.44E-31 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 225 | 323 | 4.4E-18 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 7 | 129 | 4.1E-27 | IPR036431 |
| SMART | SM00398 | hmgende2 | 241 | 310 | 7.4E-11 | IPR009071 |
| SMART | SM00501 | bright_3 | 30 | 121 | 6.3E-34 | IPR001606 |
| SMART | SM01014 | ARID_2 | 26 | 116 | 6.5E-33 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 242 | 309 | 13.956162 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 29 | 120 | 26.234243 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 241 | - | - |
| Coils | Coil | Coil | 298 | 318 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021601209.1 | high mobility group B protein 9 [Manihot esculenta] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K8Z6 | Uncharacterized protein MANES_18G008500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology