Basic Information
Locus ID:
evm.TU.utg000002l.743
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Belongs to the eukaryotic ribosomal protein eS6 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000002l | 7810104 | 7812154 | + | evm.TU.utg000002l.743 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.76 | 28,393.85 Da | 40.27 | 73.61 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01092 | Ribosomal protein S6e | 1 | 128 | 4.8E-56 | IPR001377 |
| Gene3D | G3DSA:1.20.5.2650 | - | 133 | 234 | 6.4E-39 | - |
| SMART | SM01405 | Ribosomal_S6e_2 | 1 | 128 | 1.2E-81 | IPR001377 |
| PIRSF | PIRSF002129 | RPS6e | 1 | 249 | 3.8E-119 | IPR014401 |
| ProSitePatterns | PS00578 | Ribosomal protein S6e signature. | 52 | 63 | - | IPR018282 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 249 | - | - |
| Coils | Coil | Coil | 189 | 216 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko01521 (EGFR tyrosine kinase inhibitor resistance)
map01521 (EGFR tyrosine kinase inhibitor resistance)
ko03010 (Ribosome)
map03010 (Ribosome)
ko04066 (HIF-1 signaling pathway)
map04066 (HIF-1 signaling pathway)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10360.1 | Ribosomal protein S6e. RPS6A and RPS6B are fully redundant and essential during gametogenesis. | 0 |
| RefSeq | XP_021600954.1 | 40S ribosomal protein S6 [Manihot esculenta] | 0 |
| Q9M3V8 | Small ribosomal subunit protein eS6 OS=Asparagus officinalis OX=4686 GN=rps6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9WFK3 | 40S ribosomal protein S6 OS=Manihot esculenta OX=3983 GN=MANES_02G150500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology