Basic Information
Locus ID:
evm.TU.utg000002l.712
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000002l | 7539507 | 7545816 | - | evm.TU.utg000002l.712 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.46 | 51,244.55 Da | 55.29 | 79.10 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 199 | 337 | 9.56194E-29 | - |
| CDD | cd00821 | PH | 39 | 138 | 3.37632E-12 | - |
| Pfam | PF00620 | RhoGAP domain | 199 | 342 | 5.6E-28 | IPR000198 |
| Pfam | PF00169 | PH domain | 38 | 142 | 2.2E-13 | IPR001849 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 199 | 391 | 1.02E-32 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 17 | 143 | 3.22E-19 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 27 | 144 | 9.6E-18 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 167 | 391 | 8.3E-40 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 196 | 386 | 3.6E-25 | IPR000198 |
| SMART | SM00233 | PH_update | 37 | 145 | 3.6E-16 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 190 | 389 | 28.93877 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 36 | 143 | 15.2991 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 453 | - | - |
| Coils | Coil | Coil | 124 | 144 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24580.3 | - | 0 |
| RefSeq | XP_011014131.1 | PREDICTED: rho GTPase-activating protein REN1-like isoform X3 [Populus euphratica] | 0 |
| F4JQZ3 | Rho GTPase-activating protein REN1 OS=Arabidopsis thaliana OX=3702 GN=REN1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T2YUH0 | Rho GTPase-activating protein REN1 OS=Populus deltoides OX=3696 GN=H0E87_010703 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology