Basic Information
Locus ID:
evm.TU.utg000002l.709
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000002l | 7506628 | 7513138 | - | evm.TU.utg000002l.709 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 111,684.27 Da | 50.63 | 70.43 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 77 | 114 | 1.2E-7 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 494 | 796 | 4.5E-42 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 490 | 802 | 7.85E-83 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 74 | 119 | 3.14E-9 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 64 | 118 | 1.2E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 486 | 804 | 8.6E-89 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 494 | 799 | 48.629288 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 77 | 114 | 11.403899 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 77 | 114 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 495 | 510 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 996 | 1019 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 898 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 237 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_021638801.1 | ubiquitin carboxyl-terminal hydrolase 16-like isoform X2 [Hevea brasiliensis] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L7C0 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology