Basic Information
Locus ID:
evm.TU.utg000002l.689
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000002l | 7317927 | 7330917 | + | evm.TU.utg000002l.689 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 103,428.87 Da | 38.55 | 74.55 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 266 | 553 | 2.8973E-83 | - |
| CDD | cd10317 | RGL4_C | 702 | 889 | 2.55926E-58 | - |
| CDD | cd10316 | RGL4_M | 591 | 690 | 1.39651E-34 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 259 | 460 | 2.9E-90 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 614 | 684 | 3.9E-25 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 700 | 888 | 1.4E-55 | IPR029411 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 591 | 680 | 1.29E-7 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 697 | 889 | 5.02E-53 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 274 | 554 | 9.1E-8 | IPR011013 |
| Gene3D | G3DSA:2.70.98.10 | - | 268 | 562 | 5.2E-7 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 698 | 889 | 2.6E-21 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 589 | 686 | 1.3E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 111 | 2.0E-8 | IPR013083 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09910.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021642377.1 | probable rhamnogalacturonate lyase B [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2P2INM9 | rhamnogalacturonan endolyase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology