Basic Information
Locus ID:
evm.TU.utg000002l.319
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000002l | 2316972 | 2322494 | - | evm.TU.utg000002l.319 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 68,799.00 Da | 39.75 | 96.25 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 65 | 5.5E-10 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 302 | 573 | 3.4E-44 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 29 | 190 | 3.95E-39 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 280 | 576 | 4.51E-77 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 378 | 595 | 5.6E-69 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 211 | 9.2E-63 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 270 | 377 | 1.0E-39 | - |
| SMART | SM00220 | serkin_6 | 301 | 575 | 2.4E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 301 | 588 | 36.060795 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 424 | 436 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 307 | 329 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34210.1 | somatic embryogenesis receptor-like kinase 2. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. | 0 |
| RefSeq | XP_006376338.2 | somatic embryogenesis receptor kinase 2 [Populus trichocarpa] | 0 |
| Q9XIC7 | Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=SERK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2XAL4 | Protein kinase domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_022674 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology