Basic Information
Locus ID:
evm.TU.utg000001l.49
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000001l | 503028 | 507462 | + | evm.TU.utg000001l.49 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 41,359.89 Da | 50.06 | 77.67 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 154 | 203 | 1.14157E-29 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 7.18138E-32 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 342 | 384 | 5.31146E-24 | - |
| Pfam | PF09280 | XPC-binding domain | 266 | 321 | 3.7E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 346 | 381 | 8.4E-12 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.5E-19 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 163 | 198 | 3.2E-14 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 325 | 388 | 4.44E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 262 | 328 | 4.19E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 157 | 211 | 1.79E-12 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 2.0E-22 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 338 | 385 | 3.5E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 257 | 322 | 2.4E-27 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.5E-28 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 153 | 203 | 3.3E-22 | - |
| SMART | SM00727 | CBM | 264 | 307 | 2.6E-5 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 4.5E-21 | IPR000626 |
| SMART | SM00165 | uba_6 | 160 | 200 | 5.8E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 346 | 383 | 1.1E-8 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 389 | 2.2E-115 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 158 | 201 | 12.426409 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.478973 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 343 | 384 | 14.643341 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 357 | 371 | 5.1E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 372 | 387 | 5.1E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 292 | 314 | 5.1E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 340 | 356 | 5.1E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 140 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_043806690.1 | ubiquitin receptor RAD23c isoform X2 [Manihot esculenta] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MDW7 | Ubiquitin receptor RAD23 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology