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Basic Information
Locus ID: evm.TU.utg000001l.459
Species & Taxonomic ID: Kandelia candel & 61147
Genome Assembly: GCA_037832225.1
Description: ABC transporter C family member
Maps and Mapping Data
Chromosome Start End Strand ID
PERG.utg000001l 13547533 13557775 + evm.TU.utg000001l.459
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.56 193,482.17 Da 35.99 102.82 0.10
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd03244 ABCC_MRP_domain2 1158 1378 7.22227E-121 -
CDD cd18580 ABC_6TM_ABCC_D2 845 1135 1.07419E-70 IPR044726
CDD cd18579 ABC_6TM_ABCC_D1 235 522 1.23902E-96 IPR044746
CDD cd03250 ABCC_MRP_domain1 547 751 9.08611E-77 -
Pfam PF00664 ABC transporter transmembrane region 849 1087 8.3E-26 IPR011527
Pfam PF00664 ABC transporter transmembrane region 234 501 1.2E-25 IPR011527
Pfam PF00005 ABC transporter 1177 1325 2.5E-32 IPR003439
Pfam PF00005 ABC transporter 574 704 1.9E-16 IPR003439
Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 1405 1508 1.0E-30 IPR020828
Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 1560 1717 7.2E-68 IPR020829
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 1152 1386 1.58E-65 IPR027417
SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1405 1571 1.0E-61 IPR036291
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 574 765 2.28E-46 IPR027417
SUPERFAMILY SSF90123 ABC transporter transmembrane region 847 1136 2.75E-46 IPR036640
SUPERFAMILY SSF90123 ABC transporter transmembrane region 229 529 7.06E-33 IPR036640
SUPERFAMILY SSF55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1554 1717 4.46E-76 -
Gene3D G3DSA:3.40.50.300 - 1143 1396 3.2E-80 IPR027417
Gene3D G3DSA:3.40.50.720 - 1405 1732 3.4E-155 -
Gene3D G3DSA:3.30.360.10 Dihydrodipicolinate Reductase; domain 2 1554 1719 3.4E-155 -
Gene3D G3DSA:1.20.1560.10 ABC transporter type 1, transmembrane domain 212 531 1.0E-48 IPR036640
Gene3D G3DSA:3.40.50.300 - 557 801 2.5E-64 IPR027417
Gene3D G3DSA:1.20.1560.10 ABC transporter type 1, transmembrane domain 809 1141 6.9E-54 IPR036640
SMART SM00846 gp_dh_n_7 1405 1555 1.0E-84 IPR020828
SMART SM00382 AAA_5 1186 1379 1.5E-12 IPR003593
SMART SM00382 AAA_5 578 760 1.3E-10 IPR003593
TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 1406 1729 1.7E-127 IPR006424
ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. 238 514 34.886887 IPR011527
ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile. 1160 1394 17.687208 IPR003439
ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile. 526 775 19.347862 IPR003439
ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. 847 1123 33.785976 IPR011527
ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 1553 1560 - IPR020830
ProSitePatterns PS00211 ABC transporters family signature. 677 691 - IPR017871
PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 1673 1688 6.8E-45 IPR020831
PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 1549 1567 6.8E-45 IPR020831
PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 1576 1592 6.8E-45 IPR020831
PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 1514 1527 6.8E-45 IPR020831
PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 1633 1650 6.8E-45 IPR020831
Gene Ontology
Biological Process:
GO:0006006 (glucose metabolic process) GO:0055085 (transmembrane transport)
Molecular Function:
GO:0005524 (ATP binding) GO:0016620 (oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor) GO:0050661 (NADP binding) GO:0051287 (NAD binding) GO:0140359 (ABC-type transporter activity)
Cellular Component:
GO:0016020 (membrane)
KEGG Pathway
KO Term:
K05665 (ATP-binding cassette, subfamily C (CFTR/MRP), member 1 [EC:7.6.2.3])
Pathway:
ko01523 (Antifolate resistance) map01523 (Antifolate resistance) ko02010 (ABC transporters) map02010 (ABC transporters) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G04120.1 multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. 0
RefSeq XP_043805127.1 putative ABC transporter C family member 15 isoform X1 [Manihot esculenta] 0
Swiss-Prot Q9LK64 ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 0
TrEMBL A0A4S4EQS0 ABC-type xenobiotic transporter OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_025886 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 9 jg20168, jg26747, jg34547, jg35463, jg35464, jg35677, jg8650 ...
jg37788, jg9554
Aizoaceae Mesembryanthemum crystallinum 9 gene_11143, gene_1270, gene_13803, gene_13804, gene_13805 ...
gene_26186, gene_26187, gene_3543, gene_6425
Amaranthaceae Atriplex hortensis 9 Ah001083, Ah010622, Ah010623, Ah010624, Ah013833, Ah022649 ...
Ah022662, Ah023370, Ah029154
Amaranthaceae Beta vulgaris 7 BVRB_5g116010, BVRB_5g116040, BVRB_5g116050, BVRB_6g151560 ...
BVRB_7g165990, BVRB_9g220080, BVRB_9g220100
Amaranthaceae Salicornia bigelovii 12 Sbi_jg1105, Sbi_jg11531, Sbi_jg11532, Sbi_jg29048 ...
Sbi_jg3268, Sbi_jg35483, Sbi_jg42732, Sbi_jg45357, Sbi_jg46471, Sbi_jg46472, Sbi_jg46474, Sbi_jg50013
Amaranthaceae Salicornia europaea 6 Seu_jg11220, Seu_jg1675, Seu_jg20780, Seu_jg20784 ...
Seu_jg3600, Seu_jg6662
Amaranthaceae Suaeda aralocaspica 6 GOSA_00000085, GOSA_00002580, GOSA_00005215, GOSA_00006744 ...
GOSA_00022880, GOSA_00023939
Amaranthaceae Suaeda glauca 24 Sgl11523, Sgl16900, Sgl17021, Sgl35092, Sgl40477, Sgl45566 ...
Sgl45567, Sgl50348, Sgl50349, Sgl51256, Sgl55965, Sgl55966, Sgl56394, Sgl56560, Sgl61136, Sgl61137, Sgl65894, Sgl65915, Sgl70193, Sgl74258, Sgl74274, Sgl74339, Sgl77827, Sgl77885
Amaranthaceae Chenopodium album 10 gene:ENSEOMG00000013989, gene:ENSEOMG00000017494 ...
gene:ENSEOMG00000025699, gene:ENSEOMG00000035824, gene:ENSEOMG00000036344, gene:ENSEOMG00000037168, gene:ENSEOMG00000043496, gene:ENSEOMG00000048466, gene:ENSEOMG00000051950, gene:ENSEOMG00000052601
Amaranthaceae Chenopodium quinoa 18 CQ.Regalona.r1.1AG0004340, CQ.Regalona.r1.1AG0007980 ...
CQ.Regalona.r1.2BG0021480, CQ.Regalona.r1.2BG0021490, CQ.Regalona.r1.2BG0027880, CQ.Regalona.r1.5AG0021980, CQ.Regalona.r1.5BG0023400, CQ.Regalona.r1.6AG0006370, CQ.Regalona.r1.6BG0003550, CQ.Regalona.r1.6BG0014320, CQ.Regalona.r1.7BG0010280, CQ.Regalona.r1.7BG0010290, CQ.Regalona.r1.7BG0013630, CQ.Regalona.r1.9AG0011100, CQ.Regalona.r1.9AG0014340, CQ.Regalona.r1.9AG0014350, CQ.Regalona.r1.9BG0011320, CQ.Regalona.r1.9BG0011330
Anacardiaceae Pistacia vera 13 pistato.v30001070, pistato.v30015290, pistato.v30153700 ...
pistato.v30153710, pistato.v30155190, pistato.v30155200, pistato.v30155210, pistato.v30155220, pistato.v30156990, pistato.v30157000, pistato.v30228030, pistato.v30282000, pistato.v30282010
Apiaceae Apium graveolens 13 Ag10G00405, Ag10G00847, Ag11G03740, Ag2G01280, Ag2G01283 ...
Ag2G01284, Ag2G01709, Ag5G02280, Ag6G02781, Ag7G00348, Ag7G02293, Ag9G02858, AgUnG00712
Arecaceae Cocos nucifera 5 COCNU_07G004230, COCNU_07G009110, COCNU_08G003370 ...
scaffold030856G000020, scaffold030856G000040
Arecaceae Phoenix dactylifera 5 gene-LOC103697619, gene-LOC103697840, gene-LOC103703562 ...
gene-LOC103708769, gene-LOC103711867
Asparagaceae Asparagus officinalis 7 AsparagusV1_01.2436.V1.1, AsparagusV1_01.2439.V1.1 ...
AsparagusV1_04.1745.V1.1, AsparagusV1_04.245.V1.1, AsparagusV1_04.511.V1.1, AsparagusV1_10.1874.V1.1, AsparagusV1_10.1875.V1.1
Asteraceae Flaveria trinervia 8 Ftri12G23933, Ftri14G09505, Ftri14G23598, Ftri15G19944 ...
Ftri16G14674, Ftri7G11446, Ftri7G28108, Ftri8G05646
Brassicaceae Arabidopsis thaliana 7 AT1G04120.1, AT1G71330.1, AT3G13080.1, AT3G13090.1 ...
AT3G13100.1, AT3G60160.1, AT3G60970.1
Brassicaceae Eutrema salsugineum 5 Thhalv10001878m.g.v1.0, Thhalv10005742m.g.v1.0 ...
Thhalv10006549m.g.v1.0, Thhalv10019893m.g.v1.0, Thhalv10019894m.g.v1.0
Brassicaceae Schrenkiella parvula 6 Sp1g02940.v2.2, Sp3g11250.v2.2, Sp3g11260.v2.2 ...
Sp3g11270.v2.2, Sp3g33590.v2.2, Sp5g03050.v2.2
Brassicaceae Brassica nigra 9 BniB01g052050.2N, BniB04g024430.2N, BniB05g052710.2N ...
BniB06g046700.2N, BniB06g053730.2N, BniB07g026740.2N, BniB07g026750.2N, BniB07g026770.2N, BniB07g055840.2N
Casuarinaceae Casuarina equisetifolia 6 Ceq01G1445, Ceq01G1446, Ceq05G0984, Ceq06G1252, Ceq07G1281 ...
Ceq07G1282
Casuarinaceae Casuarina glauca 12 Cgl01G1609, Cgl01G1610, Cgl01G1611, Cgl01G1612, Cgl01G1613 ...
Cgl05G0980, Cgl05G1063, Cgl05G1068, Cgl06G0322, Cgl06G1314, Cgl07G1354, Cgl07G1358
Cymodoceaceae Cymodocea nodosa 4 gene.Cymno03g06570, gene.Cymno07g04250, gene.Cymno07g13060 ...
gene.Cymno16g05750
Hydrocharitaceae Thalassia testudinum 4 gene.Thate04g23780, gene.Thate05g13860, gene.Thate05g21650 ...
gene.Thate08g00610
Malvaceae Hibiscus hamabo Siebold & Zucc. 2 nbisL1-mrna-3195, nbisL1-mrna-3904
Nitrariaceae Nitraria sibirica 4 evm.TU.LG03.709, evm.TU.LG04.1372, evm.TU.LG04.9 ...
evm.TU.LG05.1997
Plantaginaceae Plantago ovata 11 Pov_00005378, Pov_00012276, Pov_00012277, Pov_00015178 ...
Pov_00022241, Pov_00029519, Pov_00030964, Pov_00032476, Pov_00032534, Pov_00032536, Pov_00041533
Plumbaginaceae Limonium bicolor 9 Lb1G00953, Lb4G23730, Lb4G23731, Lb4G25782, Lb4G25788 ...
Lb4G25789, Lb5G27455, Lb5G28864, Lb5G28867
Poaceae Echinochloa crus-galli 24 AH01.4115, AH01.5266, AH02.1865, AH02.1868, AH02.477 ...
AH03.287, AH07.1558, AH09.2102, BH01.4418, BH01.4945, BH02.1855, BH02.498, BH03.368, BH09.2267, BH09.845, CH01.4676, CH01.5550, CH02.2087, CH02.2093, CH02.541, CH03.437, CH09.2412, CH09.530, CH09.918
Poaceae Eleusine coracana subsp. coracana 12 gene-QOZ80_1AG0011520, gene-QOZ80_1AG0019120 ...
gene-QOZ80_1BG0060160, gene-QOZ80_1BG0069220, gene-QOZ80_3AG0233330, gene-QOZ80_3BG0294680, gene-QOZ80_4AG0305960, gene-QOZ80_4BG0336930, gene-QOZ80_4BG0351310, gene-QOZ80_6AG0510650, gene-QOZ80_7AG0556360, gene-QOZ80_7BG0587320
Poaceae Hordeum vulgare 7 HORVU.MOREX.r3.2HG0196780.1, HORVU.MOREX.r3.2HG0196800.1 ...
HORVU.MOREX.r3.3HG0241380.1, HORVU.MOREX.r3.3HG0302160.1, HORVU.MOREX.r3.3HG0305140.1, HORVU.MOREX.r3.4HG0396580.1.CDS1, HORVU.MOREX.r3.4HG0412040.1
Poaceae Lolium multiflorum 20 gene-QYE76_014643, gene-QYE76_017221, gene-QYE76_017222 ...
gene-QYE76_045832, gene-QYE76_045833, gene-QYE76_045834, gene-QYE76_050582, gene-QYE76_050585, gene-QYE76_050606, gene-QYE76_050612, gene-QYE76_050614, gene-QYE76_050615, gene-QYE76_050618, gene-QYE76_050620, gene-QYE76_050621, gene-QYE76_050624, gene-QYE76_056333, gene-QYE76_056372, gene-QYE76_057142, gene-QYE76_070864
Poaceae Oryza coarctata 9 Oco01G003010, Oco01G027580, Oco02G028650, Oco04G008330 ...
Oco05G002610, Oco06G002560, Oco07G014400, Oco07G014410, Oco08G013870
Poaceae Oryza sativa 7 LOC_Os01g07870.1, LOC_Os01g67580.1, LOC_Os02g18670.1 ...
LOC_Os02g18700.1, LOC_Os03g04920.1, LOC_Os04g49890.1, LOC_Os04g49900.1
Poaceae Paspalum vaginatum 7 gene-BS78_01G484900, gene-BS78_02G039800 ...
gene-BS78_03G046200, gene-BS78_03G149500, gene-BS78_05G118100, gene-BS78_06G207300, gene-BS78_06G207500
Poaceae Puccinellia tenuiflora 12 Pt_Chr0100120, Pt_Chr0100229, Pt_Chr0200367, Pt_Chr0200368 ...
Pt_Chr0200369, Pt_Chr0205468, Pt_Chr0301571, Pt_Chr0302092, Pt_Chr0504413, Pt_Chr0504475, Pt_Chr0600266, Pt_Chr0600312
Poaceae Sporobolus alterniflorus 16 Chr01G037580, Chr02G019760, Chr03G005210, Chr03G008450 ...
Chr04G004690, Chr05G010770, Chr06G012330, Chr07G006850, Chr08G005680, Chr10G020600, Chr12G001840, Chr15G014160, Chr23G003050, Chr23G014710, Chr26G014230, Chr29G010370
Poaceae Thinopyrum elongatum 10 Tel1E01G500300, Tel2E01G766700, Tel3E01G216200 ...
Tel3E01G499900, Tel3E01G579400, Tel3E01G624000, Tel4E01G402700, Tel4E01G430400, Tel4E01G430500, Tel4E01G563500
Poaceae Triticum dicoccoides 17 gene_TRIDC1AG046120, gene_TRIDC1BG052180 ...
gene_TRIDC2AG064430, gene_TRIDC2AG064450, gene_TRIDC2BG064630, gene_TRIDC2BG068750, gene_TRIDC2BG068770, gene_TRIDC3AG016150, gene_TRIDC3AG052200, gene_TRIDC3AG056080, gene_TRIDC3BG020980, gene_TRIDC3BG058750, gene_TRIDC3BG062740, gene_TRIDC4AG007040, gene_TRIDC4BG044040, gene_TRIDC4BG057910, gene_TRIDC5AG073120
Poaceae Triticum aestivum 26 TraesCS1A02G310100.1, TraesCS1B02G321200.1 ...
TraesCS1D02G309600.1, TraesCS2A02G451300.1, TraesCS2A02G451500.1, TraesCS2B02G442400.1, TraesCS2B02G472800.1, TraesCS2B02G473000.1, TraesCS2D02G420400.1, TraesCS2D02G451100.2, TraesCS2D02G451300.1, TraesCS3A02G129000.1, TraesCS3A02G362500.1, TraesCS3A02G393500.1, TraesCS3B02G148100.2, TraesCS3B02G395000.2, TraesCS3B02G425500.1, TraesCS3D02G129900.2, TraesCS3D02G356300.2, TraesCS3D02G387200.1, TraesCS4A02G051100.1, TraesCS4B02G253200.1, TraesCS4B02G343800.2, TraesCS4D02G253300.3, TraesCS4D02G339000.2, TraesCS5A02G512500.2
Poaceae Zea mays 7 Zm00001eb003490_P001, Zm00001eb072510_P001 ...
Zm00001eb314450_P001, Zm00001eb314470_P001, Zm00001eb336810_P001, Zm00001eb402410_P003, Zm00001eb428300_P001
Poaceae Zoysia japonica 6 nbis-gene-13157, nbis-gene-13158, nbis-gene-2941 ...
nbis-gene-41956, nbis-gene-4536, nbis-gene-6840
Poaceae Zoysia macrostachya 2 Zma_g20326, Zma_g7975
Portulacaceae Portulaca oleracea 13 evm.TU.LG01.528, evm.TU.LG03.1366, evm.TU.LG04.1029 ...
evm.TU.LG04.235, evm.TU.LG07.1754, evm.TU.LG07.1755, evm.TU.LG12.11, evm.TU.LG13.95, evm.TU.LG15.1433, evm.TU.LG18.1182, evm.TU.LG18.727, evm.TU.LG20.697, evm.TU.LG26.301
Posidoniaceae Posidonia oceanica 5 gene.Posoc02g15890, gene.Posoc05g01300, gene.Posoc08g15700 ...
gene.Posoc08g15730, gene.Posoc09g00820
Rhizophoraceae Bruguiera sexangula 4 evm.TU.Scaffold_11_RagTag.21, evm.TU.Scaffold_15_RagTag.836 ...
evm.TU.Scaffold_5_RagTag.1151, evm.TU.Scaffold_7_RagTag.90
Rhizophoraceae Carallia pectinifolia 7 nbisL1-mrna-11625, nbisL1-mrna-19647, nbisL1-mrna-24241 ...
nbisL1-mrna-27025, nbisL1-mrna-27212, nbisL1-mrna-28416, nbisL1-mrna-7124
Rhizophoraceae Ceriops tagal 5 nbisL1-mrna-11343, nbisL1-mrna-11475, nbisL1-mrna-2183 ...
nbisL1-mrna-3998, nbisL1-mrna-6125
Rhizophoraceae Ceriops zippeliana 4 nbisL1-mrna-10246, nbisL1-mrna-14526, nbisL1-mrna-15566 ...
nbisL1-mrna-22320
Rhizophoraceae Kandelia candel 8 add.evm.TU.utg000005l.34, add.evm.TU.utg000028l.23 ...
add.evm.TU.utg000028l.24, add.evm.TU.utg000034l.13, evm.TU.utg000001l.459, evm.TU.utg000005l.362, evm.TU.utg000006l.415, evm.TU.utg000028l.55
Rhizophoraceae Kandelia obovata 6 Maker00002597, Maker00008913, Maker00010037, Maker00010486 ...
Maker00013143, Maker00019079
Rhizophoraceae Rhizophora apiculata 4 nbisL1-mrna-11199, nbisL1-mrna-224, nbisL1-mrna-8014 ...
nbisL1-mrna-9881
Rhizophoraceae Rhizophora mangle 5 nbisL1-mrna-11981, nbisL1-mrna-17688, nbisL1-mrna-19855 ...
nbisL1-mrna-22099, nbisL1-mrna-22612
Salicaceae Populus euphratica 14 populus_peu00799, populus_peu00800, populus_peu00801 ...
populus_peu00810, populus_peu00811, populus_peu05895, populus_peu07650, populus_peu21692, populus_peu26657, populus_peu26717, populus_peu30771, populus_peu35067, populus_peu35080, populus_peu37218
Solanaceae Lycium barbarum 5 gene-LOC132610372, gene-LOC132616633, gene-LOC132619127 ...
gene-LOC132635271, gene-LOC132641229
Solanaceae Solanum chilense 4 SOLCI001954200, SOLCI004087700, SOLCI004205800 ...
SOLCI007444600
Solanaceae Solanum pennellii 3 gene-LOC107020823, gene-LOC107026039, gene-LOC107031366
Tamaricaceae Reaumuria soongarica 5 STRG.200_chr01_+, gene_11105, gene_3245, gene_3367 ...
gene_9165
Tamaricaceae Tamarix chinensis 4 TC01G0537, TC10G0867, TC10G2306, TC11G0402
Zosteraceae Zostera marina 6 Zosma01g09670.v3.1, Zosma04g09370.v3.1, Zosma04g09380.v3.1 ...
Zosma05g11310.v3.1, Zosma05g27300.v3.1, Zosma05g27310.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.