Basic Information
Locus ID:
evm.TU.utg000001l.459
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000001l | 13547533 | 13557775 | + | evm.TU.utg000001l.459 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 193,482.17 Da | 35.99 | 102.82 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1158 | 1378 | 7.22227E-121 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 845 | 1135 | 1.07419E-70 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 235 | 522 | 1.23902E-96 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 547 | 751 | 9.08611E-77 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 849 | 1087 | 8.3E-26 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 234 | 501 | 1.2E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1177 | 1325 | 2.5E-32 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 574 | 704 | 1.9E-16 | IPR003439 |
| Pfam | PF00044 | Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | 1405 | 1508 | 1.0E-30 | IPR020828 |
| Pfam | PF02800 | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain | 1560 | 1717 | 7.2E-68 | IPR020829 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1152 | 1386 | 1.58E-65 | IPR027417 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1405 | 1571 | 1.0E-61 | IPR036291 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 574 | 765 | 2.28E-46 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 847 | 1136 | 2.75E-46 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 229 | 529 | 7.06E-33 | IPR036640 |
| SUPERFAMILY | SSF55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 1554 | 1717 | 4.46E-76 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 1143 | 1396 | 3.2E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.720 | - | 1405 | 1732 | 3.4E-155 | - |
| Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 1554 | 1719 | 3.4E-155 | - |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 212 | 531 | 1.0E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 557 | 801 | 2.5E-64 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 809 | 1141 | 6.9E-54 | IPR036640 |
| SMART | SM00846 | gp_dh_n_7 | 1405 | 1555 | 1.0E-84 | IPR020828 |
| SMART | SM00382 | AAA_5 | 1186 | 1379 | 1.5E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 578 | 760 | 1.3E-10 | IPR003593 |
| TIGRFAM | TIGR01534 | GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I | 1406 | 1729 | 1.7E-127 | IPR006424 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 238 | 514 | 34.886887 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1160 | 1394 | 17.687208 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 526 | 775 | 19.347862 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 847 | 1123 | 33.785976 | IPR011527 |
| ProSitePatterns | PS00071 | Glyceraldehyde 3-phosphate dehydrogenase active site. | 1553 | 1560 | - | IPR020830 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 677 | 691 | - | IPR017871 |
| PRINTS | PR00078 | Glyceraldehyde-3-phosphate dehydrogenase signature | 1673 | 1688 | 6.8E-45 | IPR020831 |
| PRINTS | PR00078 | Glyceraldehyde-3-phosphate dehydrogenase signature | 1549 | 1567 | 6.8E-45 | IPR020831 |
| PRINTS | PR00078 | Glyceraldehyde-3-phosphate dehydrogenase signature | 1576 | 1592 | 6.8E-45 | IPR020831 |
| PRINTS | PR00078 | Glyceraldehyde-3-phosphate dehydrogenase signature | 1514 | 1527 | 6.8E-45 | IPR020831 |
| PRINTS | PR00078 | Glyceraldehyde-3-phosphate dehydrogenase signature | 1633 | 1650 | 6.8E-45 | IPR020831 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_043805127.1 | putative ABC transporter C family member 15 isoform X1 [Manihot esculenta] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4S4EQS0 | ABC-type xenobiotic transporter OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_025886 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology