Basic Information
Locus ID:
evm.TU.utg000001l.244
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
recombinational repair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000001l | 11288753 | 11300039 | - | evm.TU.utg000001l.244 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 105,818.88 Da | 41.55 | 81.84 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 753 | 904 | 8.34912E-53 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 230 | 553 | 2.00525E-84 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 251 | 630 | 3.7E-67 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 797 | 894 | 1.6E-13 | IPR001650 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 667 | 711 | 2.0E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 656 | 705 | 2.16E-12 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 561 | 951 | 2.15E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 215 | 553 | 1.36E-42 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 411 | 565 | 9.4E-32 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 568 | 952 | 6.4E-64 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 653 | 718 | 2.0E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 323 | 410 | 1.4E-9 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 203 | 293 | 1.0E-10 | IPR038718 |
| SMART | SM00490 | helicmild6 | 811 | 894 | 3.4E-16 | IPR001650 |
| SMART | SM00184 | ring_2 | 668 | 708 | 0.0014 | IPR001841 |
| SMART | SM00487 | ultradead3 | 226 | 532 | 2.6E-25 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 668 | 707 | 11.191014 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 784 | 947 | 13.172909 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 245 | 515 | 11.433331 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 683 | 692 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 322 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021675592.1 | helicase-like transcription factor CHR28 [Hevea brasiliensis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251L508 | Helicase-like transcription factor CHR28 OS=Manihot esculenta OX=3983 GN=MANES_04G162000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology