Basic Information
Locus ID:
evm.TU.utg000001l.120
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
SEC12-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000001l | 1107164 | 1110805 | - | evm.TU.utg000001l.120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 43,905.70 Da | 38.92 | 90.27 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 205 | 224 | 0.035 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 338 | 367 | 0.2 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 170 | 191 | 0.18 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 48 | 373 | 1.88E-36 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 58 | 375 | 1.7E-67 | IPR015943 |
| SMART | SM00320 | WD40_4 | 287 | 326 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 193 | 0.24 | IPR001680 |
| SMART | SM00320 | WD40_4 | 330 | 369 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 197 | 235 | 0.11 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 337 | 367 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 210 | 244 | 9.138305 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 59 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_002526027.1 | SEC12-like protein 2 [Ricinus communis] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A2P2KSE6 | SEC12-like protein 2 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology