halophFGD

Basic Information

Locus ID: evm.TU.utg000001l.1

Species & Taxonomic ID: Kandelia candel & 61147

Genome Assembly: GCA_037832225.1

Description: May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
PERG.utg000001l	18534	30627	+	evm.TU.utg000001l.1

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.00	88,267.47 Da	39.43	86.47	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	9	260	1.01489E-67	-
Pfam	PF00400	WD domain, G-beta repeat	135	171	2.0E-11	IPR001680
Pfam	PF13925	con80 domain of Katanin	646	804	1.3E-52	IPR028021
Pfam	PF00400	WD domain, G-beta repeat	175	213	1.2E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	52	87	1.1E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	91	129	6.1E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	9	44	0.0068	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	7	295	9.46E-75	IPR036322
Gene3D	G3DSA:2.130.10.10	-	138	338	3.9E-38	IPR015943
Gene3D	G3DSA:2.130.10.10	-	1	137	3.9E-35	IPR015943
SMART	SM00320	WD40_4	90	129	1.2E-9	IPR001680
SMART	SM00320	WD40_4	48	87	7.5E-6	IPR001680
SMART	SM00320	WD40_4	132	171	2.1E-13	IPR001680
SMART	SM00320	WD40_4	5	45	9.9E-4	IPR001680
SMART	SM00320	WD40_4	216	254	3.4	IPR001680
SMART	SM00320	WD40_4	174	213	2.5E-10	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	97	131	11.787407	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	97	138	14.986489	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	139	180	18.829582	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	55	96	15.588017	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	55	92	11.681953	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	139	176	14.634665	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	181	222	16.055872	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	12	54	10.742378	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	181	216	12.762857	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	12	44	8.623787	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	200	214	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	158	172	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	200	214	3.5E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	116	130	3.5E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	158	172	3.5E-8	IPR020472
Hamap	MF_03022	Katanin p80 WD40 repeat-containing subunit B1 [KATNB1].	1	807	20.717896	IPR026962
MobiDBLite	mobidb-lite	consensus disorder prediction	360	417	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	377	403	-	-

Gene Ontology

Biological Process:

GO:0051013 (microtubule severing)

Molecular Function:

GO:0005515 (protein binding) GO:0008017 (microtubule binding)

Cellular Component:

GO:0008352 (katanin complex)

KEGG Pathway

KO Term:

K18643 (katanin p80 WD40 repeat-containing subunit B1)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G08390.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_024462636.1	katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 [Populus trichocarpa]
Swiss-Prot	F4KB17	Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1
TrEMBL	A0A2P2M719	Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Rhizophora mucronata OX=61149 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg20304, jg22035, jg5079
Aizoaceae	Mesembryanthemum crystallinum	2	gene_22289, gene_25334
Amaranthaceae	Atriplex hortensis	4	Ah017931, Ah024700, Ah038645, Ah038646
Amaranthaceae	Beta vulgaris	1	BVRB_9g202260
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg10176, Sbi_jg14659, Sbi_jg26388, Sbi_jg55416
Amaranthaceae	Salicornia europaea	2	Seu_jg22253, Seu_jg25981
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00014013, GOSA_00023970
Amaranthaceae	Suaeda glauca	6	Sgl45799, Sgl45800, Sgl45839, Sgl50534, Sgl78017, Sgl80522
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000009427, gene:ENSEOMG00000011078 ... gene:ENSEOMG00000027532, gene:ENSEOMG00000031772, gene:ENSEOMG00000035988, gene:ENSEOMG00000041313, gene:ENSEOMG00000044088
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.2AG0005330, CQ.Regalona.r1.4AG0017400 ... CQ.Regalona.r1.4BG0017810, CQ.Regalona.r1.8AG0004330, CQ.Regalona.r1.8BG0004650
Anacardiaceae	Pistacia vera	2	pistato.v30092450, pistato.v30212810
Apiaceae	Apium graveolens	2	Ag5G01879, Ag8G01941
Arecaceae	Cocos nucifera	4	COCNU_08G009940, COCNU_09G006950, COCNU_14G006400 ... scaffold000040G000080
Arecaceae	Phoenix dactylifera	4	gene-LOC103696578, gene-LOC103698051, gene-LOC103714616 ... gene-LOC103716371
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2222.V1.1, AsparagusV1_07.2138.V1.1
Asteraceae	Flaveria trinervia	3	Ftri13G03933, Ftri15G01385, Ftri5G14987
Brassicaceae	Arabidopsis thaliana	4	AT1G11160.1, AT1G61210.1, AT5G08390.1, AT5G23430.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10005394m.g.v1.0, Thhalv10006699m.g.v1.0 ... Thhalv10012683m.g.v1.0, Thhalv10023227m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g09830.v2.2, Sp2g03270.v2.2, Sp2g23730.v2.2 ... Sp6g34550.v2.2
Brassicaceae	Brassica nigra	5	BniB02g006050.2N, BniB02g076620.2N, BniB07g040740.2N ... BniB07g047230.2N, BniB08g003770.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G2447, Ceq03G1985
Casuarinaceae	Casuarina glauca	2	Cgl01G2704, Cgl03G2131
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno13g00050, gene.Cymno14g02460
Dunaliellaceae	Dunaliella salina	1	Dusal.0028s00016.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate03g12440, gene.Thate05g28660, gene.Thate07g10040 ... gene.Thate08g00910
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11052, nbisL1-mrna-3850, nbisL1-mrna-9404
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.1584, evm.TU.LG12.1006
Plantaginaceae	Plantago ovata	2	Pov_00005719, Pov_00027678
Plumbaginaceae	Limonium bicolor	5	Lb2G15301, Lb3G20755, Lb4G24638, Lb4G24640, Lb6G30412
Poaceae	Echinochloa crus-galli	10	AH01.1718, AH02.3487, AH09.2712, BH01.1919, BH02.3470 ... BH02.3505, BH09.2952, CH01.2180, CH02.3010, CH09.3250
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0035730, gene-QOZ80_1BG0085760 ... gene-QOZ80_2AG0112260, gene-QOZ80_4AG0299350, gene-QOZ80_4BG0330040
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0045950.1, HORVU.MOREX.r3.2HG0209810.1 ... HORVU.MOREX.r3.3HG0293550.1
Poaceae	Lolium multiflorum	3	gene-QYE76_011771, gene-QYE76_047525, gene-QYE76_056127
Poaceae	Oryza coarctata	6	Oco01G021880, Oco02G022450, Oco07G019300, Oco08G018570 ... Oco19G006970, Oco20G006920
Poaceae	Oryza sativa	4	LOC_Os01g34680.1, LOC_Os01g57210.1, LOC_Os04g58130.1 ... LOC_Os10g35200.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G189600, gene-BS78_03G296900 ... gene-BS78_06G284100
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0300098, Pt_Chr0300135, Pt_Chr0502734, Pt_Chr0502789 ... Pt_Chr0601626
Poaceae	Sporobolus alterniflorus	9	Chr02G007960, Chr03G017620, Chr05G025550, Chr08G024140 ... Chr15G021670, Chr23G000850, Chr25G000650, Chr26G018430, Chr30G000690
Poaceae	Thinopyrum elongatum	3	Tel1E01G300100, Tel2E01G962200, Tel3E01G512000
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG025210, gene_TRIDC1BG030250 ... gene_TRIDC2AG077500, gene_TRIDC2BG085680, gene_TRIDC3AG046170, gene_TRIDC3BG052490
Poaceae	Triticum aestivum	10	TraesCS1A02G164300.1, TraesCS1B02G181100.1 ... TraesCS1D02G151100.1, TraesCS1D02G161300.1, TraesCS2A02G592600.1, TraesCS2B02G591600.2, TraesCS2D02G561900.1, TraesCS3A02G317500.1, TraesCS3B02G349000.2, TraesCS3D02G313800.1
Poaceae	Zea mays	5	Zm00001eb044790_P002, Zm00001eb066150_P001 ... Zm00001eb283500_P001, Zm00001eb369860_P004, Zm00001eb433770_P001
Poaceae	Zoysia japonica	3	nbis-gene-11745, nbis-gene-23209, nbis-gene-6199
Poaceae	Zoysia macrostachya	4	Zma_g11280, Zma_g20696, Zma_g22228, Zma_g8778
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.1606, evm.TU.LG01.1668, evm.TU.LG02.2342 ... evm.TU.LG14.854, evm.TU.LG14.894, evm.TU.LG23.577
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g04090, gene.Posoc10g00150
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60431.1, evm.TU.60432.1, evm.TU.Scaffold_15_RagTag.2
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-23809, nbisL1-mrna-26286
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-12115, nbisL1-mrna-9155
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-17357, nbisL1-mrna-21620
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000001l.1, evm.TU.utg000027l.100
Rhizophoraceae	Kandelia obovata	2	Maker00004589, Maker00017476
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10653, nbisL1-mrna-11719
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-23919, nbisL1-mrna-2922
Salicaceae	Populus euphratica	3	populus_peu05933, populus_peu18245, populus_peu19797
Solanaceae	Lycium barbarum	3	gene-LOC132613553, gene-LOC132621242, gene-LOC132621419
Solanaceae	Solanum chilense	3	SOLCI001186500, SOLCI004632600, SOLCI006635800
Solanaceae	Solanum pennellii	3	gene-LOC107011271, gene-LOC107011518, gene-LOC107015576
Tamaricaceae	Reaumuria soongarica	2	STRG.8204_chr05_-, gene_16689
Tamaricaceae	Tamarix chinensis	2	TC01G2388, TC07G1248
Zosteraceae	Zostera marina	2	Zosma01g35090.v3.1, Zosma03g28400.v3.1