Basic Information
Locus ID:
evm.TU.LG26.87
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 1001510 | 1005905 | - | evm.TU.LG26.87 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.72 | 54,054.50 Da | 49.79 | 75.21 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 137 | 180 | 9.35569E-20 | - |
| Pfam | PF00125 | Core histone H2A/H2B/H3/H4 | 352 | 467 | 1.9E-21 | IPR007125 |
| Pfam | PF13639 | Ring finger domain | 137 | 180 | 2.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 116 | 185 | 3.28E-20 | - |
| SUPERFAMILY | SSF47113 | Histone-fold | 376 | 491 | 5.32E-51 | IPR009072 |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A | 345 | 491 | 2.3E-58 | IPR009072 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 186 | 9.5E-21 | IPR013083 |
| SMART | SM00427 | h2b3 | 394 | 490 | 1.8E-73 | IPR000558 |
| SMART | SM00184 | ring_2 | 138 | 179 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 138 | 180 | 12.740079 | IPR001841 |
| ProSitePatterns | PS00357 | Histone H2B signature. | 459 | 481 | - | IPR000558 |
| PRINTS | PR00621 | Histone H2B signature | 404 | 422 | 3.0E-47 | IPR000558 |
| PRINTS | PR00621 | Histone H2B signature | 475 | 488 | 3.0E-47 | IPR000558 |
| PRINTS | PR00621 | Histone H2B signature | 462 | 475 | 3.0E-47 | IPR000558 |
| PRINTS | PR00621 | Histone H2B signature | 423 | 443 | 3.0E-47 | IPR000558 |
| PRINTS | PR00621 | Histone H2B signature | 445 | 462 | 3.0E-47 | IPR000558 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 229 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021723692.1 | RING-H2 finger protein ATL43-like, partial [Chenopodium quinoa] | 0 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9F6E2 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology