Basic Information
Locus ID:
evm.TU.LG26.856
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 19374167 | 19379313 | - | evm.TU.LG26.856 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 11,373.77 Da | 18.94 | 77.13 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 49 | 9.16E-10 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 93 | 4.1E-10 | IPR015943 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 5 | 46 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 5 | 37 | 8.781968 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_027156327.1 | zinc finger CCCH domain-containing protein 48-like isoform X1 [Coffea eugenioides] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9EDR3 | Zinc finger CCCH domain-containing protein 48 (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology