Basic Information
Locus ID:
evm.TU.LG26.828
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Clathrin assembly protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 18210699 | 18221571 | + | evm.TU.LG26.828 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 31,392.16 Da | 35.64 | 84.13 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00722 | Glycosyl hydrolases family 16 | 137 | 252 | 4.8E-28 | IPR000757 |
| Pfam | PF07651 | ANTH domain | 5 | 69 | 1.4E-15 | IPR011417 |
| SUPERFAMILY | SSF89009 | GAT-like domain | 5 | 69 | 3.92E-16 | - |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 129 | 252 | 3.43E-31 | IPR013320 |
| Gene3D | G3DSA:1.20.58.150 | ANTH domain | 4 | 71 | 5.2E-14 | IPR014712 |
| Gene3D | G3DSA:2.60.120.200 | - | 127 | 254 | 2.5E-35 | - |
| ProSiteProfiles | PS51762 | Glycosyl hydrolases family 16 (GH16) domain profile. | 106 | 283 | 15.160051 | IPR000757 |
| ProSitePatterns | PS01034 | Glycosyl hydrolases family 16 active sites. | 205 | 215 | - | IPR008263 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01600.1 | ENTH/ANTH/VHS superfamily protein. | 0 |
| RefSeq | XP_021733123.1 | putative clathrin assembly protein At2g01600 [Chenopodium quinoa] | 0 |
| Q8LBH2 | Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana OX=3702 GN=At2g01600 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LJM5 | ENTH domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g105470 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG21.853, evm.TU.LG26.828 |
| Posidoniaceae | Posidonia oceanica | 12 | gene.Posoc01g21050, gene.Posoc01g36390, gene.Posoc04g12350 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000459 |