Basic Information
Locus ID:
evm.TU.LG26.646
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 11817436 | 11835094 | - | evm.TU.LG26.646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 59,465.07 Da | 29.84 | 105.14 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 220 | 322 | 1.32269E-21 | - |
| CDD | cd00030 | C2 | 399 | 499 | 7.13943E-26 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 26 | 205 | 1.1E-15 | IPR039010 |
| Pfam | PF00168 | C2 domain | 397 | 496 | 3.3E-23 | IPR000008 |
| Pfam | PF00168 | C2 domain | 219 | 322 | 1.6E-18 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 396 | 514 | 7.44E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 216 | 348 | 1.64E-26 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 214 | 355 | 1.1E-27 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 381 | 516 | 1.8E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 398 | 496 | 4.0E-20 | IPR000008 |
| SMART | SM00239 | C2_3c | 219 | 319 | 1.6E-19 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 199 | 320 | 18.318785 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 23 | 205 | 30.089598 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 378 | 497 | 20.697853 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 462 | 470 | 7.0E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 414 | 426 | 7.0E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 440 | 453 | 7.0E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_021862189.1 | synaptotagmin-5-like [Spinacia oleracea] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9EDV8 | Synaptotagmin-5 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology