Basic Information
Locus ID:
evm.TU.LG26.579
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 10261502 | 10262764 | + | evm.TU.LG26.579 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 47,017.44 Da | 47.19 | 91.07 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 245 | 354 | 1.3E-4 | IPR006527 |
| Pfam | PF00646 | F-box domain | 30 | 64 | 1.8E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 29 | 83 | 4.97E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 29 | 66 | 1.3E-7 | - |
| SMART | SM00256 | fbox_2 | 30 | 70 | 2.7E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 133 | 348 | 1.3E-19 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 24 | 70 | 8.649649 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50870.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_010665975.2 | F-box/kelch-repeat protein At3g23880 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9C6J3 | Putative F-box protein At1g50870 OS=Arabidopsis thaliana OX=3702 GN=At1g50870 PE=4 SV=1 | 0 | |
| TrEMBL | A0A7C9CI64 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2724 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah025637, Ah027249 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012587 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016227, gene:ENSEOMG00000037258 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0008680, CQ.Regalona.r1.9BG0013020 |
| Apiaceae | Apium graveolens | 3 | Ag1G00339, Ag4G01763, Ag4G02283 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.310 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00009381, Pov_00014464, Pov_00024395 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.457, evm.TU.LG26.579 |