Basic Information
Locus ID:
evm.TU.LG26.301
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 4650133 | 4663147 | + | evm.TU.LG26.301 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 92,257.90 Da | 32.22 | 103.75 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 1 | 161 | 8.53699E-50 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 598 | 809 | 6.48584E-116 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 190 | 392 | 3.13697E-111 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 500 | 598 | 5.7E-10 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 608 | 756 | 1.7E-32 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 210 | 344 | 2.5E-22 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 8 | 140 | 6.4E-13 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 202 | 416 | 8.43E-59 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 497 | 598 | 1.12E-13 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 7 | 168 | 1.31E-13 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 598 | 820 | 1.25E-62 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 460 | 600 | 6.1E-18 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 163 | 435 | 1.8E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 601 | 827 | 1.7E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1 | 162 | 1.1E-18 | IPR036640 |
| SMART | SM00382 | AAA_5 | 617 | 802 | 1.0E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 219 | 392 | 1.6E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 499 | 598 | 14.452541 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1 | 153 | 18.107033 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 190 | 415 | 22.72253 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 592 | 825 | 18.407492 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 317 | 331 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 463 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_043810893.1 | ABC transporter C family member 3 isoform X2 [Manihot esculenta] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | B9T463 | ABC-type xenobiotic transporter OS=Ricinus communis OX=3988 GN=RCOM_0423490 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology