Basic Information
Locus ID:
evm.TU.LG26.228
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 3145848 | 3163085 | - | evm.TU.LG26.228 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 98,776.00 Da | 44.54 | 83.14 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 703 | 752 | 1.2673E-4 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 470 | 590 | 7.8E-17 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 402 | 463 | 6.6E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 605 | 660 | 8.5E-10 | IPR020683 |
| Pfam | PF01789 | PsbP | 100 | 284 | 1.0E-11 | IPR002683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 402 | 660 | 6.87E-53 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 694 | 759 | 2.54E-7 | - |
| SUPERFAMILY | SSF55724 | Mog1p/PsbP-like | 100 | 285 | 4.87E-25 | IPR016123 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 690 | 770 | 3.1E-7 | IPR013083 |
| Gene3D | G3DSA:3.40.1000.10 | Mog1/PsbP, alpha/beta/alpha sandwich | 86 | 285 | 2.5E-24 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 532 | 679 | 8.2E-27 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 395 | 530 | 4.5E-33 | IPR036770 |
| SMART | SM00248 | ANK_2a | 605 | 634 | 7.5E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 638 | 666 | 1200.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 432 | 461 | 5.9E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 465 | 494 | 0.003 | IPR002110 |
| SMART | SM00184 | ring_2 | 703 | 752 | 0.001 | IPR001841 |
| SMART | SM00248 | ANK_2a | 499 | 529 | 0.048 | IPR002110 |
| SMART | SM00248 | ANK_2a | 562 | 591 | 2.0E-5 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 499 | 520 | 9.965 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 605 | 637 | 12.34219 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 605 | 636 | 11.134453 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 465 | 497 | 9.99171 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 703 | 753 | 9.376395 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 562 | 589 | 11.877333 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 432 | 464 | 13.27704 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 562 | 594 | 12.3689 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 432 | 463 | 12.169178 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 499 | 520 | 9.940542 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 465 | 496 | 8.905817 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 718 | 727 | - | IPR017907 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_021755342.1 | E3 ubiquitin-protein ligase XBAT32-like [Chenopodium quinoa] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QNZ5 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_158010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36769 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17836 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031891 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g043690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30306, Sbi_jg43725 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18186 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025566 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl65781, Sgl70130 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012754, gene:ENSEOMG00000020212 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0001670, CQ.Regalona.r1.8AG0022990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30253080 |
| Apiaceae | Apium graveolens | 1 | Ag11G04497 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G000890 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720913 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.3024.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G27334 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G11450.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014231m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g32150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g050620.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2259 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2457 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g00450 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0641s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g19990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1381 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013687 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04932 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2345, BH02.2451, CH02.2629 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0024710, gene-QOZ80_1BG0075330 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053852 |
| Poaceae | Oryza coarctata | 2 | Oco01G014640, Oco02G014970 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g43070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G196200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603361 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G015290, Chr03G011160, Chr08G011360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G864800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG070660, gene_TRIDC7BG065200 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G504900.2, TraesCS7B02G412200.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb159760_P002, Zm00001eb358300_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29230 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10660 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1441, evm.TU.LG26.228 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g11650 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.803, evm.TU.Scaffold_10_RagTag.804 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13681 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11904 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9050 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.129 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003888 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3817 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7913 |
| Salicaceae | Populus euphratica | 1 | populus_peu12819 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635704 |
| Solanaceae | Solanum chilense | 1 | SOLCI002940700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028820 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17242 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0427 |
| Zosteraceae | Zostera marina | 1 | Zosma01g05950.v3.1 |