Basic Information
Locus ID:
evm.TU.LG26.179
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 2214505 | 2222965 | - | evm.TU.LG26.179 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.80 | 124,799.68 Da | 64.25 | 54.01 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 702 | 831 | 4.68426E-63 | - |
| CDD | cd00201 | WW | 23 | 54 | 3.83339E-4 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 507 | 677 | 1.4E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 714 | 822 | 2.4E-32 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 15 | 53 | 4.04E-7 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 555 | 837 | 5.31E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 689 | 864 | 1.5E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 453 | 688 | 7.2E-90 | IPR027417 |
| SMART | SM00456 | ww_5 | 21 | 54 | 3.7E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 502 | 705 | 1.8E-67 | IPR014001 |
| SMART | SM00490 | helicmild6 | 742 | 822 | 6.8E-36 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 717 | 861 | 25.382397 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 514 | 688 | 31.804506 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 483 | 511 | 10.800855 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.8612 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 634 | 642 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 955 | 1146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1019 | 1064 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 892 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1065 | 1090 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 974 | 1004 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_010672591.1 | DEAD-box ATP-dependent RNA helicase 14 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QDW2 | DEAD-box ATP-dependent RNA helicase 40 OS=Spinacia oleracea OX=3562 GN=SOVF_190160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology