Basic Information
Locus ID:
evm.TU.LG26.134
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 1672696 | 1673859 | + | evm.TU.LG26.134 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.58 | 44,491.01 Da | 45.26 | 92.53 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 16 | 52 | 5.1E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 94 | 1.23E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 54 | 5.6E-8 | - |
| SMART | SM00256 | fbox_2 | 18 | 58 | 1.2E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 125 | 344 | 2.5E-17 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 12 | 57 | 10.530751 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10240.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021733536.1 | F-box protein CPR30-like [Chenopodium quinoa] | 0 |
| Q9SS35 | Putative F-box protein At3g10240 OS=Arabidopsis thaliana OX=3702 GN=At3g10240 PE=4 SV=1 | 0 | |
| TrEMBL | A0A7C8YGP6 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag10G01150 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2813 |
| Portulacaceae | Portulaca oleracea | 14 | evm.TU.LG04.2967, evm.TU.LG04.3108, evm.TU.LG10.771 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.19897_chr11_+ |