Basic Information
Locus ID:
evm.TU.LG25.875
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr25 | 25487408 | 25502718 | + | evm.TU.LG25.875 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 80,822.04 Da | 31.82 | 91.45 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08241 | QOR1 | 1 | 298 | 1.65918E-121 | - |
| Pfam | PF08240 | Alcohol dehydrogenase GroES-like domain | 39 | 97 | 1.9E-6 | IPR013154 |
| Pfam | PF00107 | Zinc-binding dehydrogenase | 162 | 234 | 5.0E-11 | IPR013149 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 373 | 617 | 1.62E-30 | IPR036322 |
| SUPERFAMILY | SSF50129 | GroES-like | 2 | 148 | 2.83E-28 | IPR011032 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 123 | 236 | 1.77E-30 | IPR036291 |
| Gene3D | G3DSA:3.40.50.720 | - | 134 | 270 | 2.2E-64 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 363 | 641 | 8.6E-17 | IPR015943 |
| Gene3D | G3DSA:3.90.180.10 | - | 37 | 298 | 2.2E-64 | - |
| SMART | SM00320 | WD40_4 | 531 | 571 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 484 | 360.0 | IPR001680 |
| SMART | SM00829 | PKS_ER_names_mod | 18 | 300 | 5.2E-15 | IPR020843 |
| SMART | SM00320 | WD40_4 | 574 | 615 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 359 | 397 | 230.0 | IPR001680 |
| ProSitePatterns | PS01162 | Quinone oxidoreductase / zeta-crystallin signature. | 151 | 172 | - | IPR002364 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 713 | 725 | - | IPR018247 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 0 |
| RefSeq | XP_021864817.1 | autophagy-related protein 18c-like [Spinacia oleracea] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9B0V2 | Autophagy-related protein 18c OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34062 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17109 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032175 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30093, Sbi_jg43542 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18360 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004135 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66127, Sgl70437 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013709, gene:ENSEOMG00000019150 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0005310, CQ.Regalona.r1.2BG0004480 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30178330 |
| Apiaceae | Apium graveolens | 1 | Ag3G02333 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G005520 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709721 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.587.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G11886 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G56460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006076m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g06080.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g056390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0005 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0009 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g13460 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0069s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g00470 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1648 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00006584, Pov_00036309, Pov_00036310 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02499 |
| Poaceae | Echinochloa crus-galli | 5 | AH05.3069, BH04.1479, BH05.3112, CH04.1693, CH05.3157 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0377920, gene-QOZ80_5BG0425040 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0601820.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_010761, gene-QYE76_010823 |
| Poaceae | Oryza coarctata | 1 | Oco10G006570 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g24880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K121700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0501301, Pt_Chr0501338 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr12G014770 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G463800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG038080, gene_TRIDC6BG045000 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G246800.1, TraesCS6B02G277800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb070150_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42162 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g28043, Zma_g28044 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG05.446, evm.TU.LG05.448, evm.TU.LG25.875 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g06600, gene.Posoc02g33080 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.205 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28374 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13229 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7687 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000023l.274 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00019074 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14037 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21487 |
| Salicaceae | Populus euphratica | 2 | populus_peu19085, populus_peu19100 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611188 |
| Solanaceae | Solanum chilense | 1 | SOLCI007072900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012754, gene-LOC107014461 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13429_chr07_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3983 |
| Zosteraceae | Zostera marina | 1 | Zosma01g11860.v3.1 |