Basic Information
Locus ID:
evm.TU.LG25.760
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr25 | 23782257 | 23782901 | - | evm.TU.LG25.760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 20,290.91 Da | 32.34 | 56.78 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 129 | 164 | 3.9E-6 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 97 | 118 | 6.59E-6 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 117 | 170 | 1.78E-9 | IPR036322 |
| Gene3D | G3DSA:3.30.1370.210 | - | 22 | 118 | 6.2E-8 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 119 | 176 | 3.9E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 125 | 164 | 1.2E-5 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 96 | 120 | 0.97 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 23 | 48 | 0.081 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 132 | 164 | 10.917412 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 11.018674 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 132 | 164 | 13.148488 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 94 | 121 | 11.535074 | IPR000571 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_048491349.1 | zinc finger CCCH domain-containing protein 17-like [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9EDR3 | Zinc finger CCCH domain-containing protein 48 (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology