Basic Information
Locus ID:
evm.TU.LG25.69
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr25 | 5367986 | 5368768 | + | evm.TU.LG25.69 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 30,260.87 Da | 49.89 | 96.35 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 16 | 56 | 9.6E-12 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 82 | 3.18E-17 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 13 | 96 | 1.1E-12 | - |
| SMART | SM00256 | fbox_2 | 14 | 54 | 3.2E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 16 | 54 | 8.888098 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G39250.1 | F-box family protein. | 0 |
| RefSeq | XP_028119018.1 | F-box protein At5g39250 [Camellia sinensis] | 0 |
| Q9FL82 | F-box protein At5g39250 OS=Arabidopsis thaliana OX=3702 GN=At5g39250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AZB8 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40206 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037913 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g205280 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg2619 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24274 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015879 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl78485, Sgl78510, Sgl80981 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019844, gene:ENSEOMG00000038929 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9AG0004440 |
| Apiaceae | Apium graveolens | 1 | Ag5G00100 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G009820 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716730, gene-LOC103722378 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2715.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G16713, Ftri18G16478 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G39250.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027896m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g02740.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g028410.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0399 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0350 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g13490 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7287 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.281 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023650 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.3662, CH01.3845, CH06.2203 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3AG0228560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0173720.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007751, gene-QYE76_066265 |
| Poaceae | Oryza coarctata | 1 | Oco06G016830 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g30920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G320600 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G023850, Chr04G013580, Chr07G013000 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G571900 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG050370 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G336200.1.cds1, TraesCS2B02G345700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb020180_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47218 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3474 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1244, evm.TU.LG25.69 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1717 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-2029, nbisL1-mrna-2171 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10587 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2909 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.83 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21597 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18226 |
| Salicaceae | Populus euphratica | 2 | populus_peu09352, populus_peu25179 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622180 |
| Solanaceae | Solanum chilense | 1 | SOLCI005079400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009710 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7670 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0336 |
| Zosteraceae | Zostera marina | 1 | Zosma05g05700.v3.1 |