Basic Information
Locus ID:
evm.TU.LG25.427
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr25 | 18748306 | 18749454 | + | evm.TU.LG25.427 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 41,682.92 Da | 80.59 | 63.56 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 191 | 232 | 1.09596E-22 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 261 | 366 | 7.4E-41 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 10 | 44 | 1.4E-14 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 190 | 232 | 3.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 171 | 238 | 1.88E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 156 | 238 | 5.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 191 | 231 | 1.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 191 | 232 | 11.884405 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 365 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_028078072.1 | probable E3 ubiquitin-protein ligase RHC2A [Camellia sinensis] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A4S4E5K2 | RING-type E3 ubiquitin transferase OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_024574 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology