Basic Information
Locus ID:
evm.TU.LG25.339
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr25 | 17369570 | 17371285 | - | evm.TU.LG25.339 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 63,308.80 Da | 40.58 | 94.62 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 317 | 342 | 0.0086 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 418 | 441 | 0.1 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 140 | 186 | 4.1E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 242 | 288 | 2.7E-11 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 483 | 512 | 0.14 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 114 | 139 | 0.0064 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 216 | 236 | 0.17 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 343 | 389 | 2.3E-9 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 295 | 484 | 6.25E-6 | IPR011990 |
| SUPERFAMILY | SSF48452 | TPR-like | 93 | 244 | 8.22E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 361 | 479 | 2.0E-26 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 55 | 193 | 1.0E-26 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 198 | 295 | 1.4E-19 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 345 | 378 | 6.9E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 245 | 277 | 6.0E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 115 | 138 | 0.0012 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 142 | 176 | 1.3E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 343 | 377 | 12.342482 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 312 | 342 | 8.516988 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 242 | 276 | 11.728648 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 140 | 174 | 10.98328 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02330.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_021855025.1 | putative pentatricopeptide repeat-containing protein At3g25970 [Spinacia oleracea] | 0 |
| Q9FWA6 | Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E90 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9EPD5 | Pentatricopeptide repeat-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g064750 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59044, Sbi_jg63579 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23302 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012853 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02459, Sgl07612 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0024540, CQ.Regalona.r1.6AG0008160 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G26839 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14260 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2635 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.999, evm.TU.LG25.339 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g26870, gene.Posoc03g26890 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-812 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7526 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2415 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.240 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001976, Maker00002066 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19228 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1854 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16337_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0297 |