Basic Information
Locus ID:
evm.TU.LG25.1246
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr25 | 29950337 | 29952489 | - | evm.TU.LG25.1246 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 62,455.34 Da | 41.09 | 83.30 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 152 | 402 | 2.9E-90 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 6 | 58 | 2.75E-6 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 152 | 426 | 89.088722 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 563 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 479 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 539 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 501 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_010679621.1 | BTB/POZ domain-containing protein NPY4 [Beta vulgaris subsp. vulgaris] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9B0K3 | NPH3 domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology