Basic Information
Locus ID:
evm.TU.LG25.1096
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr25 | 28303520 | 28304283 | + | evm.TU.LG25.1096 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 23,269.58 Da | 43.27 | 91.83 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 1 | 217 | 4.7787E-53 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 2 | 44 | 1.7E-5 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 78 | 189 | 1.2E-22 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 78 | 216 | 1.58E-33 | IPR008949 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 1 | 44 | 1.99E-11 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 72 | 219 | 3.0E-39 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 1 | 45 | 8.9E-16 | IPR008949 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 137 | 149 | - | IPR033749 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 79 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36810.1 | geranylgeranyl pyrophosphate synthase 1. Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. | 0 |
| RefSeq | XP_021757912.1 | geranylgeranyl pyrophosphate synthase, chloroplastic-like [Chenopodium quinoa] | 0 |
| Q42698 | Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Catharanthus roseus OX=4058 GN=GGPS1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803KVZ0 | Geranylgeranyl pyrophosphate synthase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology