Basic Information
Locus ID:
evm.TU.LG25.1087
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Short Name:
LYK4
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr25 | 28213154 | 28217001 | - | evm.TU.LG25.1087 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 56,700.02 Da | 37.60 | 104.16 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 264 | 496 | 7.6E-31 | IPR001245 |
| Pfam | PF05562 | Cold acclimation protein WCOR413 | 25 | 143 | 5.9E-22 | IPR008892 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 217 | 499 | 8.68E-53 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 305 | 508 | 2.0E-44 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 209 | 303 | 4.6E-12 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 236 | 500 | 24.357841 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 350 | 362 | - | IPR008266 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_021719092.1 | lysM domain receptor-like kinase 4 [Chenopodium quinoa] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RQ16 | Protein kinase domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_041680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16925 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g137990 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg37768, Sbi_jg5912 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28099 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013459 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl34663 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000004056, gene:ENSEOMG00000027105 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0018190, CQ.Regalona.r1.6BG0019260 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30207330 |
| Apiaceae | Apium graveolens | 1 | Ag5G00788 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0720 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0729 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9992 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2265 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32409 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.223, evm.TU.LG25.1087 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17164 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17781 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15564 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3134 |
| Salicaceae | Populus euphratica | 1 | populus_peu23512 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3438 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0540 |