Basic Information
Locus ID:
evm.TU.LG25.1086
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr25 | 28203631 | 28212379 | + | evm.TU.LG25.1086 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 133,664.81 Da | 42.35 | 78.39 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 154 | 206 | 3.16413E-31 | - |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 671 | 708 | 0.009 | IPR002885 |
| Pfam | PF00412 | LIM domain | 154 | 209 | 5.0E-10 | IPR001781 |
| Pfam | PF12854 | PPR repeat | 1069 | 1101 | 1.3E-7 | IPR002885 |
| Pfam | PF12315 | Protein DA1 | 303 | 513 | 3.5E-96 | IPR022087 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 923 | 975 | 3.2E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 769 | 797 | 0.15 | IPR002885 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 146 | 179 | 4.63E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 180 | 234 | 3.59E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 150 | 213 | 4.0E-15 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1000 | 1142 | 9.1E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 597 | 826 | 3.9E-25 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 874 | 999 | 6.9E-14 | IPR011990 |
| SMART | SM00726 | uim | 42 | 61 | 150.0 | IPR003903 |
| SMART | SM00132 | lim_4 | 153 | 205 | 4.5E-14 | IPR001781 |
| SMART | SM00726 | uim | 97 | 116 | 0.13 | IPR003903 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1075 | 1108 | 2.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 769 | 799 | 0.0018 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1038 | 1072 | 8.527949 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 695 | 729 | 8.823904 | IPR002885 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 97 | 116 | 9.665059 | IPR003903 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 765 | 799 | 9.481582 | IPR002885 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 152 | 212 | 12.2266 | IPR001781 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 929 | 963 | 9.273317 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1073 | 1107 | 11.619036 | IPR002885 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 154 | 188 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 474 | - | - |
| Coils | Coil | Coil | 53 | 84 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_021847823.1 | protein DA1-related 1 isoform X1 [Spinacia oleracea] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6A3AJP2 | Pentatricopeptide repeat-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110437pilonHSYRG00072 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology