Basic Information
Locus ID:
evm.TU.LG24.968
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Protein trichome birefringence-like 6
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 28888223 | 28901539 | + | evm.TU.LG24.968 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 129,905.81 Da | 35.59 | 80.01 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02585 | HAD_PMM | 915 | 1149 | 1.40441E-128 | IPR005002 |
| Pfam | PF13839 | GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | 306 | 584 | 1.6E-96 | IPR026057 |
| Pfam | PF00106 | short chain dehydrogenase | 619 | 788 | 3.4E-25 | IPR002347 |
| Pfam | PF03332 | Eukaryotic phosphomannomutase | 937 | 1150 | 2.1E-107 | IPR005002 |
| Pfam | PF14416 | PMR5 N terminal Domain | 252 | 305 | 3.0E-24 | IPR025846 |
| Pfam | PF00106 | short chain dehydrogenase | 833 | 874 | 1.3E-6 | IPR002347 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 618 | 888 | 2.87E-45 | IPR036291 |
| SUPERFAMILY | SSF56784 | HAD-like | 916 | 1149 | 9.55E-62 | IPR036412 |
| Gene3D | G3DSA:3.40.50.720 | - | 610 | 900 | 3.5E-87 | - |
| Gene3D | G3DSA:3.30.1240.20 | - | 993 | 1094 | 1.4E-109 | IPR043169 |
| Gene3D | G3DSA:3.40.50.1000 | - | 915 | 1146 | 1.4E-109 | IPR023214 |
| TIGRFAM | TIGR01484 | HAD-SF-IIB: HAD hydrolase, family IIB | 916 | 1128 | 1.0E-28 | IPR006379 |
| ProSitePatterns | PS00061 | Short-chain dehydrogenases/reductases family signature. | 823 | 851 | - | IPR020904 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 773 | 781 | 1.8E-9 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 767 | 783 | 3.5E-22 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 836 | 855 | 3.5E-22 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 855 | 872 | 3.5E-22 | IPR002347 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 696 | 707 | 1.8E-9 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 696 | 707 | 3.5E-22 | IPR002347 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 836 | 855 | 1.8E-9 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 619 | 636 | 3.5E-22 | IPR002347 |
| SFLD | SFLDG01143 | C2.B.3: Phosphomannomutase Like | 910 | 1150 | 0.0 | - |
| SFLD | SFLDF00445 | alpha-phosphomannomutase | 910 | 1150 | 0.0 | IPR005002 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62390.1 | TRICHOME BIREFRINGENCE-LIKE 6. Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). | 0 |
| RefSeq | XP_021837246.1 | protein trichome birefringence-like 6 [Spinacia oleracea] | 0 |
| Q9LZQ1 | Protein trichome birefringence-like 6 OS=Arabidopsis thaliana OX=3702 GN=TBL6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8YEG6 | PMR5N domain-containing protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26861, jg29650 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23293 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036085 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g170670 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39971, Sbi_jg55301 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14363 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00011108, GOSA_00014121, GOSA_00014122 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41841, Sgl46641 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018611, gene:ENSEOMG00000035043 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0021990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30004080 |
| Apiaceae | Apium graveolens | 1 | Ag6G00164 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G007430 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719400 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.901.V1.1, AsparagusV1_06.1267.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G28088, Ftri3G17219 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G45790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001604m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g27860.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g001280.2N, BniB06g004180.2N, BniB08g029880.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2764, Ceq05G0146 |
| Casuarinaceae | Casuarina glauca | 5 | Cgl03G2507, Cgl03G3001, Cgl03G3002, Cgl05G0150, Cgl05G1288 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g00660 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0091s00023.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g28220, gene.Thate03g09230 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6128, nbisL1-mrna-9495 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.899 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032050 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11031 |
| Poaceae | Echinochloa crus-galli | 8 | AH09.2742, BH09.2987, CH02.1612, CH02.1620, CH04.1178 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0299070, gene-QOZ80_4BG0329750 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0213480.1, HORVU.MOREX.r3.4HG0395170.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_047618, gene-QYE76_047683 |
| Poaceae | Oryza coarctata | 2 | Oco07G019550, Oco08G018820 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g58580.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G008800, gene-BS78_06G287500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307088 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G010870, Chr12G026040, Chr23G000680, Chr25G000510 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G976000, Tel4E01G410700 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG078810, gene_TRIDC2BG086970 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2B02G599300.1, TraesCS2D02G593400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb065790_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18035 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20708 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.965, evm.TU.LG24.968 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04790 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.293 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10870 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11137 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.289, evm.TU.utg000006l.558 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009354, Maker00013373 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9213 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7010 |
| Salicaceae | Populus euphratica | 2 | populus_peu27736, populus_peu27737 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600003, gene-LOC132640627 |
| Solanaceae | Solanum chilense | 3 | SOLCI001068600, SOLCI001178800, SOLCI004055600 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107018662, gene-LOC107019957, gene-LOC107026845 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_1447, gene_15243, gene_15244 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2179 |
| Zosteraceae | Zostera marina | 1 | Zosma01g35290.v3.1 |