Basic Information
Locus ID:
evm.TU.LG24.927
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 28261780 | 28274989 | + | evm.TU.LG24.927 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 92,155.06 Da | 46.74 | 85.64 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 755 | 796 | 1.44475E-24 | - |
| CDD | cd01989 | STK_N | 24 | 177 | 2.33393E-43 | - |
| Pfam | PF04564 | U-box domain | 751 | 820 | 1.9E-18 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 469 | 721 | 5.9E-42 | IPR000719 |
| SUPERFAMILY | SSF57850 | RING/U-box | 751 | 819 | 3.97E-24 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 41 | 151 | 9.21E-7 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 440 | 723 | 4.18E-69 | IPR011009 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 751 | 821 | 4.1E-29 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 537 | 740 | 5.3E-48 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 20 | 166 | 1.5E-7 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 449 | 536 | 1.1E-26 | - |
| SMART | SM00220 | serkin_6 | 464 | 734 | 2.6E-36 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 754 | 817 | 1.4E-30 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 464 | 734 | 35.848785 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 750 | 821 | 35.030739 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 582 | 594 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 470 | 491 | - | IPR017441 |
| Coils | Coil | Coil | 286 | 337 | - | - |
| Coils | Coil | Coil | 339 | 428 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_010670307.2 | U-box domain-containing protein 33 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9RKS5 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_061300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology