Basic Information
Locus ID:
evm.TU.LG24.589
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
SEC12-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 21164543 | 21170628 | + | evm.TU.LG24.589 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 42,483.92 Da | 30.80 | 84.68 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 159 | 236 | 3.5E-6 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 93 | 350 | 3.91E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 48 | 358 | 7.9E-62 | IPR015943 |
| SMART | SM00320 | WD40_4 | 182 | 220 | 4.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 271 | 310 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 141 | 179 | 0.46 | IPR001680 |
| SMART | SM00320 | WD40_4 | 312 | 352 | 1.1 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 52 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021755153.1 | SEC12-like protein 2 [Chenopodium quinoa] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A7C9EVD3 | ANAPC4_WD40 domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology