Basic Information
Locus ID:
evm.TU.LG24.323
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 11220913 | 11228280 | + | evm.TU.LG24.323 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.71 | 47,640.93 Da | 52.74 | 65.13 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 270 | 345 | 2.66958E-33 | - |
| CDD | cd12352 | RRM1_TIA1_like | 66 | 136 | 4.23921E-36 | - |
| CDD | cd12619 | RRM2_PUB1 | 150 | 224 | 4.32138E-49 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 272 | 329 | 2.2E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 151 | 221 | 1.1E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 66 | 132 | 5.0E-12 | IPR000504 |
| SUPERFAMILY | SSF81995 | beta-sandwich domain of Sec23/24 | 2 | 61 | 1.73E-5 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 262 | 353 | 3.53E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 62 | 227 | 1.42E-43 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 144 | 2.1E-27 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 250 | 349 | 1.9E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 145 | 249 | 1.2E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 65 | 134 | 1.8E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 271 | 341 | 4.0E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 150 | 223 | 7.5E-24 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 270 | 345 | 14.931036 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 149 | 227 | 17.284681 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 64 | 138 | 14.982202 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 267 | - | - |
| Coils | Coil | Coil | 1 | 33 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_010685278.1 | oligouridylate-binding protein 1B [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9DU33 | Oligouridylate binding protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology