Basic Information
Locus ID:
evm.TU.LG24.250
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 7564111 | 7567994 | - | evm.TU.LG24.250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 54,338.78 Da | 44.59 | 94.00 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 113 | 311 | 1.38937E-135 | - |
| CDD | cd18787 | SF2_C_DEAD | 322 | 452 | 5.57067E-60 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 335 | 443 | 9.3E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 134 | 295 | 1.3E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 178 | 463 | 3.35E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 99 | 317 | 7.8E-68 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 318 | 482 | 6.5E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 128 | 325 | 8.8E-58 | IPR014001 |
| SMART | SM00490 | helicmild6 | 362 | 443 | 2.9E-31 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 140 | 310 | 29.880562 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 109 | 137 | 10.433057 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 321 | 482 | 25.795689 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 256 | 264 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_018835118.1 | eukaryotic initiation factor 4A-15 [Juglans regia] | 0 |
| P41379 | Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZH22 | RNA helicase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology