Basic Information
Locus ID:
evm.TU.LG24.215
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 6334513 | 6335276 | + | evm.TU.LG24.215 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 15,597.59 Da | 54.60 | 93.31 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 81 | 132 | 2.8E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 63 | 135 | 1.1E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 44 | 136 | 1.9E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 82 | 131 | 3.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 82 | 132 | 10.158304 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17905.1 | RING/U-box superfamily protein. Putative RING-H2 finger protein ATL4H. | 0 |
| RefSeq | XP_010667996.2 | E3 ubiquitin-protein ligase RNF181-like [Beta vulgaris subsp. vulgaris] | 0 |
| P0C041 | Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2 | 0 | |
| TrEMBL | A0A6G0XRX4 | RING-type domain-containing protein OS=Aphanomyces euteiches OX=100861 GN=Ae201684_002158 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05910.1 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.2020, evm.TU.LG01.2613, evm.TU.LG13.1520 ... |