Basic Information
Locus ID:
evm.TU.LG24.1322
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
D-arabinono-1,4-lactone oxidase family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 33136078 | 33160285 | - | evm.TU.LG24.1322 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 178,007.80 Da | 41.15 | 74.58 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12251 | RRM3_hnRNPR_like | 1407 | 1486 | 6.58495E-30 | - |
| CDD | cd00590 | RRM_SF | 1235 | 1307 | 1.04298E-22 | - |
| Pfam | PF01565 | FAD binding domain | 570 | 702 | 7.4E-19 | IPR006094 |
| Pfam | PF04030 | D-arabinono-1,4-lactone oxidase | 769 | 1038 | 2.1E-10 | IPR007173 |
| Pfam | PF04030 | D-arabinono-1,4-lactone oxidase | 367 | 501 | 5.0E-10 | IPR007173 |
| Pfam | PF01565 | FAD binding domain | 31 | 163 | 2.7E-17 | IPR006094 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1410 | 1479 | 4.4E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1315 | 1381 | 5.1E-9 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1235 | 1305 | 1.6E-21 | IPR000504 |
| SUPERFAMILY | SSF56176 | FAD-binding/transporter-associated domain-like | 555 | 742 | 2.43E-35 | IPR036318 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 1230 | 1398 | 6.79E-39 | IPR035979 |
| SUPERFAMILY | SSF56176 | FAD-binding/transporter-associated domain-like | 17 | 206 | 1.03E-36 | IPR036318 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 1401 | 1517 | 3.76E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1150 | 1313 | 3.4E-31 | IPR012677 |
| Gene3D | G3DSA:3.30.465.10 | - | 625 | 742 | 4.0E-30 | IPR016169 |
| Gene3D | G3DSA:3.30.43.10 | - | 17 | 84 | 3.6E-5 | IPR016167 |
| Gene3D | G3DSA:3.30.43.10 | - | 548 | 623 | 2.6E-7 | IPR016167 |
| Gene3D | G3DSA:3.30.70.330 | - | 1396 | 1534 | 1.2E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1314 | 1394 | 7.8E-19 | IPR012677 |
| Gene3D | G3DSA:3.30.70.2520 | - | 365 | 465 | 7.7E-5 | - |
| Gene3D | G3DSA:3.30.70.2520 | - | 901 | 1002 | 5.1E-6 | - |
| Gene3D | G3DSA:3.30.465.10 | - | 88 | 220 | 2.2E-25 | IPR016169 |
| SMART | SM00360 | rrm1_1 | 1314 | 1391 | 5.9E-11 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 1409 | 1482 | 16.0 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 1234 | 1307 | 8.5E-27 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 1409 | 1482 | 1.4E-16 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 1234 | 1307 | 2.3E-6 | IPR003954 |
| TIGRFAM | TIGR01677 | pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase | 536 | 1085 | 4.1E-251 | IPR010030 |
| TIGRFAM | TIGR01677 | pln_FAD_oxido: plant-specific FAD-dependent oxidoreductase | 9 | 535 | 8.9E-247 | IPR010030 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 1408 | 1486 | 15.425642 | IPR000504 |
| ProSiteProfiles | PS51387 | PCMH-type FAD-binding domain profile. | 563 | 743 | 21.109484 | IPR016166 |
| ProSiteProfiles | PS51387 | PCMH-type FAD-binding domain profile. | 24 | 207 | 20.753809 | IPR016166 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 1313 | 1395 | 12.389781 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 1233 | 1311 | 19.945324 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1175 | 1221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1142 | 1221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1569 | 1602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1565 | 1611 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1142 | 1174 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46760.1 | D-arabinono-1,4-lactone oxidase family protein. | 0 |
| RefSeq | XP_010690348.2 | probable L-gulonolactone oxidase 6 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O81032 | Probable L-gulonolactone oxidase 6 OS=Arabidopsis thaliana OX=3702 GN=GULLO6 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803KZU3 | L-gulonolactone oxidase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology