Basic Information
Locus ID:
evm.TU.LG24.1214
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 31890560 | 31896199 | + | evm.TU.LG24.1214 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 49,950.79 Da | 42.02 | 74.53 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 287 | 318 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 323 | 357 | 0.0099 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 162 | 197 | 2.8E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 160 | 447 | 8.24E-50 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 130 | 152 | 7.69E-6 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 250 | 455 | 1.8E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 152 | 249 | 2.9E-13 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 55 | 151 | 4.6E-8 | - |
| SMART | SM00356 | c3hfinal6 | 129 | 153 | 0.046 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 55 | 80 | 0.0032 | IPR000571 |
| SMART | SM00320 | WD40_4 | 200 | 235 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 274 | 5.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 318 | 6.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 158 | 197 | 2.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 364 | 405 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 411 | 445 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 358 | 0.0045 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 165 | 202 | 11.444681 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 127 | 154 | 12.164144 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 288 | 319 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 165 | 206 | 15.220417 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 55 | 81 | 11.328514 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 288 | 327 | 13.482671 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 184 | 198 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 305 | 319 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 345 | 359 | 3.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 305 | 319 | 3.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 184 | 198 | 3.0E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_048491280.1 | zinc finger CCCH domain-containing protein 48 [Beta vulgaris subsp. vulgaris] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9EAM5 | WD_REPEATS_REGION domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology