Basic Information
Locus ID:
evm.TU.LG24.1122
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 30786211 | 30787491 | + | evm.TU.LG24.1122 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 46,683.59 Da | 44.27 | 105.75 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 16 | 59 | 2.18458E-23 | - |
| Pfam | PF04564 | U-box domain | 12 | 89 | 3.4E-16 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 90 | 1.84E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 193 | 402 | 1.23E-12 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 96 | 2.9E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 114 | 404 | 5.3E-11 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 15 | 85 | 1.5E-24 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 290 | 333 | 8.5224 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 11 | 92 | 30.537123 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_021857852.1 | E3 ubiquitin-protein ligase PUB23-like [Spinacia oleracea] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LXM4 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology