Basic Information
Locus ID:
evm.TU.LG24.1115
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 30647417 | 30655367 | + | evm.TU.LG24.1115 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 54,783.91 Da | 33.78 | 88.71 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 78 | 166 | 1.3E-5 | IPR006527 |
| Pfam | PF07734 | F-box associated | 285 | 375 | 1.7E-5 | IPR006527 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 201 | 408 | 1.5E-16 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 51 | 169 | 1.4E-10 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 482 | - | - |
| Coils | Coil | Coil | 454 | 475 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_010686147.1 | F-box/kelch-repeat protein At3g23880-like [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8W4C2 | Uncharacterized protein OS=Salvia splendens OX=180675 GN=SASPL_153039 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_19844, gene_19846, gene_19848, gene_5734 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003462 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl72718, Sgl76257, Sgl76258 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000038235 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1114, evm.TU.LG24.1115 |