Basic Information
Locus ID:
evm.TU.LG23.946
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 30966188 | 30974974 | - | evm.TU.LG23.946 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 54,795.15 Da | 56.01 | 81.02 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 263 | 311 | 4.3753E-15 | - |
| Pfam | PF12906 | RING-variant domain | 263 | 310 | 4.0E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 259 | 314 | 6.85E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 250 | 319 | 2.2E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 262 | 311 | 7.8E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 255 | 317 | 19.203537 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 206 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021745986.1 | uncharacterized protein LOC110711854 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A7C8ZBB7 | RING-CH-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology